View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_20 (Length: 366)
Name: NF13209_low_20
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_20 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 366
Target Start/End: Original strand, 13749334 - 13749697
Alignment:
| Q |
8 |
acatcatcatcataatccacataattgcttccctaggtcacataacacgccaaaatcaaatctcatgcccaaatctaacattatcatcaaatg-gttttt |
106 |
Q |
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| T |
13749334 |
acattatcatcataatccacataattgcttccctaggtcacagaacacgccaaaatcaaatctcatgcccaaatctaacattatcatcaaatgagttttt |
13749433 |
T |
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| Q |
107 |
gaannnnnnnaaaaatccaacaaaattttagatacttgagctttgtcatctctaaagacaatttatggtttagaaaattagatatatgtcatacacat-- |
204 |
Q |
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| T |
13749434 |
gaaattttttagaaatccaagaaaattttagatacttgagctttgtcatctccaaaggcaatttacggtttagaaaattagatatttgtcatacacataa |
13749533 |
T |
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| Q |
205 |
--ctttaaatccataagttttcaatagattatgaacaccaaacaaaccagaagttttcaattcaagatccctggaagttttcttatgatgtctaggaata |
302 |
Q |
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| T |
13749534 |
ttctttaaatccataagttttcaatagattaagaacacccaacaaaccagaagttttcaattcaagatccctggaagttttcttatgatgtctaggaaca |
13749633 |
T |
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| Q |
303 |
gttttaacaatcaaagtaacaaaaccagcaacaaatgcagcgaacaatattatcacctctcacc |
366 |
Q |
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| T |
13749634 |
gttttaacaatcaaagtaacaaaaccatcaacaaaggcatcgaacaacattatcacctctcacc |
13749697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 8 - 150
Target Start/End: Complemental strand, 13598942 - 13598790
Alignment:
| Q |
8 |
acatcatcatcataatccacataattgcttccctaggtcaca---------taacacgccaaaatcaaatctcatgcccaaatctaacattatcatcaaa |
98 |
Q |
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| T |
13598942 |
acattatcatcataatccacataattgcttccctaagtcacaccgtttctgtaacacaccaaaatcaaatctcatacccaaaatcaacattatcatcaaa |
13598843 |
T |
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| Q |
99 |
t-ggtttttgaannnnnnnaaaaatccaacaaaattttagatacttgagcttt |
150 |
Q |
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| T |
13598842 |
tgggtttttgaatttttttagaaatccaacaattttttagatacttgagcttt |
13598790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 43114181 - 43114223
Alignment:
| Q |
8 |
acatcatcatcataatccacataattgcttccctaggtcacat |
50 |
Q |
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| T |
43114181 |
acattatcatcataatccacataattgcttccctagatcacat |
43114223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 165 - 361
Target Start/End: Original strand, 56234005 - 56234209
Alignment:
| Q |
165 |
caatttatggtttagaaaattagatatatgtcatacacat----ctttaaatccataagttttcaatagattatgaacaccaaacaaaccagaagttttc |
260 |
Q |
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| T |
56234005 |
caatttctggtttagaaaattaaatatatgtcatacacataattctttaaatccataagttttcaatagattatgaacatcaaataaaccagaagttctc |
56234104 |
T |
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| Q |
261 |
aattcaagatccctggaagttttcttatgatgtctaggaa----tagttttaacaatcaaagtaacaaaaccagcaacaaatgcagcgaacaatattatc |
356 |
Q |
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| T |
56234105 |
aattcaagatcactggaagttttcttatgatgtctaggaacagttagttttaacaatcaaagtaacaaaacgagcaacaaaagcagcggacaatattatc |
56234204 |
T |
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| Q |
357 |
acctc |
361 |
Q |
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| T |
56234205 |
acctc |
56234209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 281 - 353
Target Start/End: Original strand, 10570053 - 10570125
Alignment:
| Q |
281 |
tttcttatgatgtctaggaatagttttaacaatcaaagtaacaaaaccagcaacaaatgcagcgaacaatatt |
353 |
Q |
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| T |
10570053 |
tttcttatgatgtctaggaacagttttaacaatcaaagtaacaaaaccagcaacaaaagcagcaaacaatatt |
10570125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 37610440 - 37610289
Alignment:
| Q |
13 |
atcatcataatccacataattgcttccctaggtcaca-------------taacacgccaaaatcaaatctcatgcccaaatctaacattatcatcaaat |
99 |
Q |
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| T |
37610440 |
atcatcataatccacataattgcttccctaagtcacactgtttctttctgtaacacaccaaaatcaaatctcatacccaaatccaacattatcatcaaat |
37610341 |
T |
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| Q |
100 |
-ggtttttgaannnnnnnaaaaatccaacaaaattttagatacttgagcttt |
150 |
Q |
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| T |
37610340 |
gggtttttgaatttttttagaaatccaacaattttttagatacttgagcttt |
37610289 |
T |
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