View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_21 (Length: 361)
Name: NF13209_low_21
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 335
Target Start/End: Complemental strand, 31156313 - 31155986
Alignment:
| Q |
9 |
caagaaaatgtgtatttccttagagcaagct-agacattgatcaaggaaaataaaagtctctgcatatacttcaatgatacagttgatggctctagaaaa |
107 |
Q |
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| T |
31156313 |
caagaaaatgtgtatttccttagagcaagcttagacattgatcaaggaaaataaaagtctctgcatatacttcaatgatacagttgatggctctagaaaa |
31156214 |
T |
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| Q |
108 |
ggttaacaaacaaaaggctacatactaccaaattgaaaatataatgcatatttgagaacaagcaatgtgttgtattttttcaaagcacttgaaataaaag |
207 |
Q |
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| T |
31156213 |
ggttaacaaacaaaaggctacatactaccaaattgaaaatataatgcatatttgagaacaagcaatgtgttgtattctttcaaagcacttgaaataaaag |
31156114 |
T |
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| Q |
208 |
cattatgcaacatttttattgaaatgagacaaagctgtaataagctttctaagtcctagacatttagagtcagtacatggttagagcctacaagagcaga |
307 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31156113 |
cattatgcaacatttttattgaaatgagacaaaggtgtaataagctttctaagtcctaaacatttagagtcagtacatggttagagcctacaagagcaga |
31156014 |
T |
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| Q |
308 |
cagtacgaaagttctttaaaaaccacca |
335 |
Q |
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| T |
31156013 |
cagtacgaaagttctttaaaaaccacca |
31155986 |
T |
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