View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_22 (Length: 327)
Name: NF13209_low_22
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_22 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 2470597 - 2470934
Alignment:
| Q |
1 |
cagaagcagcacacagaattttctgtcagcagcggctgtacaaggtaaaagaagacgagtccaaagaaaataagtgatgatataaatcaaaggactcatc |
100 |
Q |
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| T |
2470597 |
cagaagcagcacacagaattttctgtcagcagcggctgtacaaggtaaaagaagacaagtccaaagaaaataagtgatgatataaatcaaaggactcatc |
2470696 |
T |
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| Q |
101 |
caaatacactgacagaaatttttgtacaaactaaggtgtctctgttgagaatcatgagcagttgcaccgcattcgccactagtgacgcatgttgagcttt |
200 |
Q |
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| T |
2470697 |
caaatacactgacagaaatttttgtacaaactaaggtgtgtctgttgagagtcatgagcagttgcaccgcattcgccactagtgacgtatgttgagcctt |
2470796 |
T |
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| Q |
201 |
ttcttcttctccattccttgcaaatggtacctctttttcagaacaatttcgtgtttgc-----------ttttcatcacaatctccttcaccgatgacat |
289 |
Q |
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| T |
2470797 |
ttcttcttctccattccttgcaactggtacctctttttcagaacaatttcgtgtttgctaccgtccattttctcatcacaatctccttcaccgatgacat |
2470896 |
T |
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| Q |
290 |
tattagcaactgaagtattttcccattggattcgatcc |
327 |
Q |
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| T |
2470897 |
tattaacagctgaagtattttcccattggattcgatcc |
2470934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 2462083 - 2462153
Alignment:
| Q |
170 |
cattcgccactagtgacgcatgttgagctttttcttcttctccattccttgcaaatggtacctctttttca |
240 |
Q |
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| T |
2462083 |
cattcgcctgtagtgaggcatgttcagctctttcttcttctccattccctgcaactggtacctcttcttca |
2462153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 259
Target Start/End: Original strand, 2459270 - 2459362
Alignment:
| Q |
170 |
cattcgccacta--gtgacgcatgttgagctttttcttcttctccattcc--ttgcaaatggtacctctttttcagaacaatttcgtgtttgct |
259 |
Q |
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| T |
2459270 |
cattcgccactatagtgaggcatgttcagctttttcttcttctccattcccactg-aactggtacctctttttcagaacgattgcttgtttgct |
2459362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 43282130 - 43282068
Alignment:
| Q |
42 |
aaggtaaaagaagacgagtccaaagaaaataagtgatgatataaatcaaaggactcatccaaat |
105 |
Q |
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| T |
43282130 |
aaggtaaaagaagacgggtccaaagaaaataaatgttg-tataaagcaaagaactcgtccaaat |
43282068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Complemental strand, 39536625 - 39536560
Alignment:
| Q |
178 |
actagtgacgcatgttgagctttttcttcttctccattccttgcaaatggtacctctttttcagaa |
243 |
Q |
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| T |
39536625 |
actagtgaggcacgttcagctctttcttcttttcccttccctgcaactggtatctctttttcagaa |
39536560 |
T |
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