View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_23 (Length: 319)
Name: NF13209_low_23
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 35158026 - 35158328
Alignment:
| Q |
1 |
atacaagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagatgaggacattttaccagctatcaaattaagttatgatcaattac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35158026 |
atacaagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagacgaggacattttaccagcaatcaaattaagttatgatcaattac |
35158125 |
T |
|
| Q |
101 |
cttcttatttaaaacagtgttttgcttgcttctccctctttgaaaaagacttccatttcaacaattttcatacaactgtactctgggaggcacttggttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
35158126 |
cttcttatttaaaacagtgttttgcttgcttctccctctttgaaaaagacttccatttcaacagttttcatacaattgtactctgggaggcacttggttt |
35158225 |
T |
|
| Q |
201 |
tcttcaatcaccaaacaagggtgacactttgaaagatattggcaataagtttttacaagagctacggtcaagatcttttcttcaagattttattgaccat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35158226 |
tcttcaatcaccaaacaagggtgacactttgaaagatattggcaacaagtttttaaaagagctacggtcaagatcttttcttcaagattttattgactat |
35158325 |
T |
|
| Q |
301 |
ggt |
303 |
Q |
| |
|
||| |
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|
| T |
35158326 |
ggt |
35158328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 5 - 290
Target Start/End: Original strand, 29750912 - 29751197
Alignment:
| Q |
5 |
aagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagatgaggacattttaccagctatcaaattaagttatgatcaattaccttc |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||| || ||| |||||||||||| |||||||||||| || |
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| T |
29750912 |
aagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctctcaaattaagttttgatcaattaccctc |
29751011 |
T |
|
| Q |
105 |
ttatttaaaacagtgttttgcttgcttctccctctttgaaaaagacttccatttcaacaattttcatacaactgtactctgggaggcacttggttttctt |
204 |
Q |
| |
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|||||||||| |||||||| |||||||||||||||| |||||||||||| || | |||| | | ||||| || |||||||| |||| ||||||| |
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| T |
29751012 |
atatttaaaacgatgttttgcctgcttctccctctttgtaaaagacttccactttagtaattattctgtcactgtgctttgggaggctcttgattttctt |
29751111 |
T |
|
| Q |
205 |
caatcaccaaacaagggtgacactttgaaagatattggcaataagtttttacaagagctacggtcaagatcttttcttcaagattt |
290 |
Q |
| |
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| |||||||||||||||| | || ||| ||||| | || ||| | ||||| || ||||||| ||||||||||| ||||||||||| |
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| T |
29751112 |
ccatcaccaaacaagggtaaaaccttggaagatgtcggtaatcaatttttgcacgagctacaatcaagatctttccttcaagattt |
29751197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 290
Target Start/End: Complemental strand, 29602382 - 29602097
Alignment:
| Q |
5 |
aagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagatgaggacattttaccagctatcaaattaagttatgatcaattaccttc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||||| || |||||||||||||||| |||||||||||| || |
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| T |
29602382 |
aagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaagaagatgatattttgcctgctatcaaattaagttttgatcaattaccatc |
29602283 |
T |
|
| Q |
105 |
ttatttaaaacagtgttttgcttgcttctccctctttgaaaaagacttccatttcaacaattttcatacaactgtactctgggaggcacttggttttctt |
204 |
Q |
| |
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||||||||||| |||||||| |||||||||||||| |||||||||||| | || | || | | ||||| || |||||||| |||| ||||||| |
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| T |
29602282 |
ttatttaaaacgatgttttgcctgcttctccctcttcgaaaaagacttcaaatttgttacttatactgtcactgtgctttgggaggctcttgattttctt |
29602183 |
T |
|
| Q |
205 |
caatcaccaaacaagggtgacactttgaaagatattggcaataagtttttacaagagctacggtcaagatcttttcttcaagattt |
290 |
Q |
| |
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| |||||||||||||||| | || ||| ||||| | || ||| | ||||| || ||||||| ||||||||||| ||||||||||| |
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| T |
29602182 |
ccatcaccaaacaagggtaaaaccttggaagatgtcggtaatcaatttttgcacgagctacaatcaagatctttccttcaagattt |
29602097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 29743879 - 29744161
Alignment:
| Q |
5 |
aagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagatgaggacattttaccagctatcaaattaagttatgatcaattaccttc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| | || || ||||| || |||||||||||||||| |||||||||||| || |
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| T |
29743879 |
aagagtggaagtttgttagggacaatgagatttggaatttaccacaaaaaaaagatgatattttgcctgctatcaaattaagttttgatcaattaccgtc |
29743978 |
T |
|
| Q |
105 |
ttatttaaaacagtgttttgcttgcttctccctctttgaaaaagacttccatttcaacaattttcatacaactgtactctgggaggcacttggttttctt |
204 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||||| ||||||||| || | ||| |||| ||||| || |||||||| |||| | |||| |
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| T |
29743979 |
ttatttgaaacgatgttttgcctgcttctccctctttgtaaaagactttgtatttagtaataatcatgtcactgtgctttgggaggctcttgatcttctc |
29744078 |
T |
|
| Q |
205 |
caatcaccaaacaagggtgacactttgaaagatattggcaataagtttttacaagagctacggtcaagatcttttcttcaaga |
287 |
Q |
| |
|
| |||||||||||||||| | || ||| ||||| | |||||| | ||||| || ||||||| ||||||||||| |||||||| |
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| T |
29744079 |
ccatcaccaaacaagggtaaaaccttggaagatgtcggcaattaatttttgcacgagctacaatcaagatctttccttcaaga |
29744161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 49352520 - 49352661
Alignment:
| Q |
5 |
aagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagatgaggacattttaccagctatcaaattaagttatgatcaattaccttc |
104 |
Q |
| |
|
|||||||||||||| | || |||| |||||||||||||||||| |||||||| || |||||||| || | | ||||||||||||||||||| |||||||| |
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|
| T |
49352520 |
aagagtggaagtttatcagagacagtgagatttggaatttaccacaaaaagaagatgacattttgcctggtctcaaattaagttatgatcagttaccttc |
49352619 |
T |
|
| Q |
105 |
ttatttaaaacagtgttttgcttgcttctccctctttgaaaa |
146 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
49352620 |
ttatttaaaacaatgttttgcttgcttctctctctttgaaaa |
49352661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 49341144 - 49341283
Alignment:
| Q |
5 |
aagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagatgaggacattttaccagctatcaaattaagttatgatcaattaccttc |
104 |
Q |
| |
|
|||||||||||||| ||||||| ||| |||||| ||||||| ||||||||||| |||||||| | ||||||||| |||||||||||| |||||||| |
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|
| T |
49341144 |
aagagtggaagtttaacagggacagtgaaatttgggatttaccacaaaaagatgacgacattttgtctgctatcaaa--aagttatgatcagttaccttc |
49341241 |
T |
|
| Q |
105 |
ttatttaaaacagtgttttgcttgcttctccctctttgaaaa |
146 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
49341242 |
ttatttaaaacaatgttttgcttgcttctctctctttgaaaa |
49341283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 32783749 - 32783602
Alignment:
| Q |
5 |
aagagtggaagtttgttagggacaatgagatttggaatttaccgcaaaaagatgaggacattttaccagctatcaaattaagttatgatcaattaccttc |
104 |
Q |
| |
|
|||||||||||||| | || |||| ||| |||||||||||||| |||||||| || |||||||| || ||||||||||||||||| ||||| |||||||| |
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|
| T |
32783749 |
aagagtggaagtttatcagagacagtgaaatttggaatttacctcaaaaagaagatgacattttgcctgctatcaaattaagttacgatcagttaccttc |
32783650 |
T |
|
| Q |
105 |
ttatttaaaacagtgttttgcttgcttctccctctttgaaaaagactt |
152 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
32783649 |
ttatttaaaacgatgttttacttgcttctccctctttcaaaaggactt |
32783602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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