View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_26 (Length: 284)
Name: NF13209_low_26
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 40375131 - 40374847
Alignment:
| Q |
1 |
atcaaattccaatatattcatcttagggagacaacggagaaagagagaaatgccaattttgaaaattaaaactggcattgccaagctattggaacgtagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40375131 |
atcaaattccaatatattcatcttagggagacaacggagaaagagagaaatgccaattttgaaaattaaaactggcattgccaaactattggaacgtagg |
40375032 |
T |
|
| Q |
101 |
gggtcctcttcaataatttcccttattcaccagtcaattagtaaaaataaccttcatctcttaaagtgtgatggagcatgaaacaatgacattaagggca |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40375031 |
gggtcctcttcaataatttcccttattcgccagtcaattagtacaaataaccttcatctcttaaagtgtgatggaacatgaaacaatgacattaagggca |
40374932 |
T |
|
| Q |
201 |
agga---------attcaataacagcctctctatatcctctttccaagcaagaacgataacatgtaaaatagtcacaggttctgc |
276 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40374931 |
aggaacaaatcttattcaataacagcctctctatatcctctttccaagcaagaacgataacatgtaaaatagtcataggttctgc |
40374847 |
T |
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