View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13209_low_27 (Length: 281)

Name: NF13209_low_27
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13209_low_27
NF13209_low_27
[»] chr8 (2 HSPs)
chr8 (1-273)||(33823827-33824099)
chr8 (185-269)||(28437329-28437413)
[»] chr4 (2 HSPs)
chr4 (155-267)||(23663582-23663694)
chr4 (177-267)||(45763667-45763757)
[»] chr2 (4 HSPs)
chr2 (161-264)||(41335315-41335418)
chr2 (182-267)||(24563321-24563406)
chr2 (210-261)||(3591867-3591918)
chr2 (239-273)||(3945955-3945989)
[»] chr7 (1 HSPs)
chr7 (149-274)||(8132030-8132155)
[»] chr5 (2 HSPs)
chr5 (132-267)||(13481037-13481172)
chr5 (209-266)||(18198182-18198239)
[»] chr1 (1 HSPs)
chr1 (237-267)||(34645998-34646028)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 33824099 - 33823827
Alignment:
Q  1 actttgtggtggaacaacgtgttcgagatcaaacccttgaccacttgttgaccttccaataaactccgaagaagaaactgttttcatcttgtttgtagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33824099 actttgtggtggaacaacgtgttcgagatcaaacccttgaccacttgttgaccttccaataaactccgaagaagaaactgttttcatcttgtttgtagct 33824000  T
Q  101 atttttgccgtgttgtttgaggcaccgatgctcttgtttttccggcagccacctccaattggaacgtttcttaaagcacctccttttgtccaataacgac 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823999 atttttgccgcgttgtttgaggcaccgatgctcttgtttttccggcagccacctccaattggaacgtttcttaaagcacctccttttgtccaataacgac 33823900  T
Q  201 ggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatga 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33823899 ggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttgatga 33823827  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 269
Target Start/End: Complemental strand, 28437413 - 28437329
Alignment:
Q  185 tttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtttg 269  Q
    ||||||||||| |  | |||||| ||||||||||| |  || ||||||||  | ||||||||||||||||| |||||||||||||    
T  28437413 tttgtccaatatcttctgcatgttttgcagaaatgtcttggttgagtgagactgtagttgttgtagtaacagaattttgtgtttg 28437329  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 23663694 - 23663582
Alignment:
Q  155 ccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaac 254  Q
    |||| |||||| ||||| |  ||||| ||| ||||||||||||| |  |||||||||||||| || ||||| ||||||||| | ||||||||| |||| |    
T  23663694 ccaactggaacatttctaagtgcaccccctcttgtccaataacgcctacatgtcttgcagaagtgacgaggttgagtgaggctgtagttgttgaagtagc 23663595  T
Q  255 aaaattttgtgtt 267  Q
    ||||||| |||||    
T  23663594 aaaatttagtgtt 23663582  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 45763667 - 45763757
Alignment:
Q  177 cacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtt 267  Q
    |||| ||||| ||||| ||||| |||||  | |||||||| || |||||||| | |||||| ||||| ||||||||||| ||||| |||||    
T  45763667 caccgcctttagtccagtaacgtcggcagtttttgcagaagtgacgaggctgggagaggttgtagttattgtagtaacagaatttggtgtt 45763757  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 41335418 - 41335315
Alignment:
Q  161 ggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaatt 260  Q
    ||||| |||||||| ||||| ||| ||||||||||||| |  ||||||||||| || || |  || ||||  | ||||||||||||||||||||||||||    
T  41335418 ggaacatttcttaatgcaccccctcttgtccaataacgcctacatgtcttgcaaaagtgtcttggttgagacaagttatagttgttgtagtaacaaaatt 41335319  T
Q  261 ttgt 264  Q
    ||||    
T  41335318 ttgt 41335315  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 24563406 - 24563321
Alignment:
Q  182 ccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgtt 267  Q
    ||||| ||||| || ||||||||  | || |||||||| |||||||||| |||||| |||||||||||||| || ||||| |||||    
T  24563406 cctttggtccagtagcgacggcagtttttacagaaatgacgaggctgagagaggttgtagttgttgtagtagcagaatttcgtgtt 24563321  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 3591918 - 3591867
Alignment:
Q  210 tgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattt 261  Q
    |||||||||||||||| ||||    |||||||||||||||||||||||||||    
T  3591918 tgcagaaatggcgaggttgagacttgttatagttgttgtagtaacaaaattt 3591867  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 3945955 - 3945989
Alignment:
Q  239 tagttgttgtagtaacaaaattttgtgtttgatga 273  Q
    |||||||||||||||||||| ||||||||||||||    
T  3945955 tagttgttgtagtaacaaaactttgtgtttgatga 3945989  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 274
Target Start/End: Original strand, 8132030 - 8132155
Alignment:
Q  149 ccacctccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagtgaggttatagttgttgt 248  Q
    ||||||||||  ||||||||||  |  ||||| ||||| |||||||||||||| || || ||||| |||||||| || || |  || || ||||||||||    
T  8132030 ccacctccaacaggaacgtttcgaagtgcaccacctttagtccaataacgacgacaagttttgcaaaaatggcgtggttgtgaaagattgtagttgttgt 8132129  T
Q  249 agtaacaaaattttgtgtttgatgat 274  Q
    |||| || || |||||||||| ||||    
T  8132130 agtagcagaactttgtgtttgttgat 8132155  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 267
Target Start/End: Complemental strand, 13481172 - 13481037
Alignment:
Q  132 tcttgtttttccggcagccacctccaattggaacgtttcttaaagcacctccttttgtccaataacgacggcatgtcttgcagaaatggcgaggctgagt 231  Q
    |||||||||| |  || ||||| || ||||||||||| | |||||| || |||||||||||||| |  |  ||||| ||||||||||| |  || || ||    
T  13481172 tcttgttttttctacatccaccaccgattggaacgttgcgtaaagctccaccttttgtccaatatcttctacatgttttgcagaaatgtcttggttgtgt 13481073  T
Q  232 gaggttatagttgttgtagtaacaaaattttgtgtt 267  Q
     | | |||||||||||||||| || |||||||||||    
T  13481072 taagctatagttgttgtagtagcagaattttgtgtt 13481037  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 18198239 - 18198182
Alignment:
Q  209 ttgcagaaatggcgaggctgagtgaggttatagttgttgtagtaacaaaattttgtgt 266  Q
    |||||||| || ||||||||  ||| ||| |||||||||||||| |||||||||||||    
T  18198239 ttgcagaagtgtcgaggctgtttgacgttgtagttgttgtagtagcaaaattttgtgt 18198182  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 267
Target Start/End: Complemental strand, 34646028 - 34645998
Alignment:
Q  237 tatagttgttgtagtaacaaaattttgtgtt 267  Q
    |||||||||||||||||||||||||||||||    
T  34646028 tatagttgttgtagtaacaaaattttgtgtt 34645998  T

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