View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13209_low_36 (Length: 227)

Name: NF13209_low_36
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13209_low_36
NF13209_low_36
[»] chr4 (11 HSPs)
chr4 (1-210)||(2471033-2471242)
chr4 (30-210)||(2459557-2459724)
chr4 (47-176)||(5103191-5103320)
chr4 (48-208)||(5094137-5094293)
chr4 (108-176)||(5107348-5107417)
chr4 (75-178)||(2462372-2462474)
chr4 (47-178)||(2476476-2476605)
chr4 (47-182)||(2622073-2622203)
chr4 (35-101)||(2369248-2369313)
chr4 (1-49)||(2466430-2466479)
chr4 (12-72)||(2490012-2490072)
[»] chr6 (1 HSPs)
chr6 (1-89)||(8286103-8286191)
[»] chr8 (1 HSPs)
chr8 (1-89)||(26373193-26373282)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 2471033 - 2471242
Alignment:
Q  1 caacgtgttcttgtttgttatagagttgtacttgaattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttactttttatgctct 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2471033 caacgtgttcttgtttgttatagcgttgtacttgaattctgttttacatctacggagcacgctttaaagactcttgcagcatttttactttttatgctct 2471132  T
Q  101 tcaagcgtaaataaataataaatgaattatgctgcctaatgtctggctgtattgaaaaatataatagtgaaagttattgaatgaatattgataaagaaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  2471133 tcaagcgtaaataaataataaatgaattatgctgcctaatgtctggctgtattgaaaactatgatagtgaaagttattgaatgaatattgataaagaaac 2471232  T
Q  201 cataacaaac 210  Q
    ||||||||||    
T  2471233 cataacaaac 2471242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 2459557 - 2459724
Alignment:
Q  30 acttgaattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaatgaatta 129  Q
    |||||||||||||||||||||||||||| ||  ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||          
T  2459557 acttgaattctgttttacatctaaggagtacaatttaaaggctcttgcatcatttttactttttatgctcttcaagcttaaataaataatatat------ 2459650  T
Q  130 tgctgcctaatgtctggctgtattgaaaaatataatagtgaaagttattgaatgaatattgataaagaaaccataacaaac 210  Q
       |||||||||||||||| ||||||||| |||||| |||||||||||    | ||||||||| |||||||||||||||||    
T  2459651 ---tgcctaatgtctggctttattgaaaactataattgtgaaagttat----taaatattgatgaagaaaccataacaaac 2459724  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 5103320 - 5103191
Alignment:
Q  47 catctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaat-gaattatgctgcctaatgtctg 145  Q
    |||||||||||||   |||||||| ||| | | ||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||| |||||||||    
T  5103320 catctaaggagcattatttaaagattct-gtatcatttttactttttatgctcttcaagcctaaagaaataataaatggtattatgctgcttaatgtctg 5103222  T
Q  146 gctgtattgaaaaatataatagtgaaagtta 176  Q
    |||||||| |||||| |||| ||||||||||    
T  5103221 gctgtattaaaaaatgtaattgtgaaagtta 5103191  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 48 - 208
Target Start/End: Complemental strand, 5094293 - 5094137
Alignment:
Q  48 atctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaat-gaattatgctgcctaatgtctgg 146  Q
    |||||| ||||||| || ||||| ||| ||| |||||||||||||||| |||||||||| ||||| |||||||||| ||||||||||||  ||| |||||    
T  5094293 atctaaagagcacgattaaaagattct-gcatcatttttactttttatactcttcaagcctaaat-aataataaatggaattatgctgctaaatatctgg 5094196  T
Q  147 ctgtattgaaaaatataa-tagtgaaagttattgaatgaatattgataaagaaaccataacaa 208  Q
    |||||||||||| ||||| |  | ||||||||    ||||||||||| |||||||||||||||    
T  5094195 ctgtattgaaaactataactgttaaaagttat----tgaatattgatgaagaaaccataacaa 5094137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 5107417 - 5107348
Alignment:
Q  108 taaataaataataaatga-attatgctgcctaatgtctggctgtattgaaaaatataatagtgaaagtta 176  Q
    |||||||||||||||||  |||||||||| |||| ||||||||||||||||| |||||||||||||||||    
T  5107417 taaataaataataaatggtattatgctgcttaatatctggctgtattgaaaactataatagtgaaagtta 5107348  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 178
Target Start/End: Original strand, 2462372 - 2462474
Alignment:
Q  75 tgcagcatttttactttttatgctcttcaagcgtaaataaataataaat-gaattatgctgcctaatgtctggctgtattgaaaaatataatagtgaaag 173  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| |||| | |||||| | || || |||||| || ||| |||| ||||||||||||||    
T  2462372 tgcatcatttttactttttatgctcttcaagcttaaataaataaaaaatggtattatgattcc-aacgtctggttg-attaaaaactataatagtgaaag 2462469  T
Q  174 ttatt 178  Q
    |||||    
T  2462470 ttatt 2462474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 2476476 - 2476605
Alignment:
Q  47 catctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaat-gaattatgctgcctaatgtctg 145  Q
    ||||||||||||||  || ||||| ||| ||| ||||||||| |||| |||||||||||| ||||||||||| |||| | |||||||| || ||||||||    
T  2476476 catctaaggagcacaattaaaagattct-gcatcatttttaccttttttgctcttcaagcttaaataaataaaaaatggtattatgcttcc-aatgtctg 2476573  T
Q  146 gctgtattgaaaaatataatagtgaaagttatt 178  Q
    | |  |||||||| |||| ||||||||||||||    
T  2476574 g-tcgattgaaaactatagtagtgaaagttatt 2476605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 182
Target Start/End: Complemental strand, 2622203 - 2622073
Alignment:
Q  47 catctaaggagcacgctttaaagactcttgcagcatttttactttttatgctcttcaagcgtaaataaataataaatgaattatgctgcctaatgtctgg 146  Q
    |||||||||||| || ||||||||||||| || || ||||||||| || ||||||| ||| ||||   ||| ||   | |||||| || ||||||||| |    
T  2622203 catctaaggagc-cgatttaaagactcttacatcagttttactttgtacgctcttcgagcttaaaagcatagta---gtattatgttgtctaatgtctag 2622108  T
Q  147 ctgtattgaaaaatataatagtgaaagttattgaat 182  Q
    |||||||||||| |||||| ||| ||||||||||||    
T  2622107 ctgtattgaaaagtataattgtg-aagttattgaat 2622073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 2369313 - 2369248
Alignment:
Q  35 aattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttactttttatgctctt 101  Q
    |||||| ||||| ||| |||||||||  |||||||| ||| ||| ||||||||||||||||||||||    
T  2369313 aattcttttttatatccaaggagcaccatttaaagattct-gcaacatttttactttttatgctctt 2369248  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 2466430 - 2466479
Alignment:
Q  1 caacgtgttcttgtttgttatagagttgtac-ttgaattctgttttacat 49  Q
    |||||||||| ||||||||||||| ||| || ||||||||||||||||||    
T  2466430 caacgtgttcatgtttgttatagacttgaactttgaattctgttttacat 2466479  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 2490012 - 2490072
Alignment:
Q  12 tgtttgttatagagttgtacttgaattctgttttacatctaaggagcacgctttaaagact 72  Q
    ||||||||||| | ||| ||| |||||||||||| | | ||||||||||| ||||||||||    
T  2490012 tgtttgttataaacttgaactcgaattctgttttgcctataaggagcacgatttaaagact 2490072  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8286191 - 8286103
Alignment:
Q  1 caacgtgttcttgtttgttatagagttgtacttgaattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttact 89  Q
    |||| ||||| |||||||||||||  |  |||||| ||||||||| |||||||||| || | |||||||||||||||| ||||||||||    
T  8286191 caacatgttcatgtttgttatagacgttaacttgagttctgttttgcatctaaggaacatgatttaaagactcttgcatcatttttact 8286103  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 26373193 - 26373282
Alignment:
Q  1 caacgtgttcttgtttgttatagagttgtactt-gaattctgttttacatctaaggagcacgctttaaagactcttgcagcatttttact 89  Q
    |||| ||||| |||||||||| || ||| |||| || || |||||| ||| ||||||||| | || ||||||||||||| ||||||||||    
T  26373193 caacatgttcatgtttgttattgacttgaacttagagttatgttttgcatataaggagcatgattcaaagactcttgcatcatttttact 26373282  T

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