View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13209_low_38 (Length: 209)
Name: NF13209_low_38
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_38 |
 | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0596 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 1241 - 1416
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
1241 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatattttaaaatcatgt |
1340 |
T |
|
| Q |
118 |
gtannnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
1341 |
gtatttttttttcaaacacaccaatatgtccattgatgctgacc-tttaatgattgtgctttcctcttcgctctgtg |
1416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 9e-63; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 10328559 - 10328384
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
10328559 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgt |
10328460 |
T |
|
| Q |
118 |
gtannnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
||| |||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
10328459 |
gtatttttttttcaaacacaccaatatgtccattgatgttgacc-tttaatgattgtgctttcctcttcgctctgtg |
10328384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 12742275 - 12742452
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatc--at |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || |
|
|
| T |
12742275 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatat |
12742374 |
T |
|
| Q |
116 |
gtgtannnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
12742375 |
gtgtatttttttttcaaacacaccaatatgtccattgatgctgacc-tttaatgattgtgctttccacttcgctctgtg |
12742452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 18354841 - 18354665
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatc--at |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| || |
|
|
| T |
18354841 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatat |
18354742 |
T |
|
| Q |
116 |
gtgtannnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
18354741 |
gtgta-ttttttttcaaacacaccaatatgtccattgatgctgacc-tttaatgattgtgctttccacttcgctctgtg |
18354665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 23348514 - 23348338
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
23348514 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgt |
23348415 |
T |
|
| Q |
118 |
gt-annnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
|| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
23348414 |
gtgtttttttttttaaacacaccaatatgtccattaatgctgacc-tttaatgattgtgctttccacttcgctctgtg |
23348338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 5e-61; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 53972820 - 53972644
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
53972820 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgt |
53972721 |
T |
|
| Q |
118 |
gta-nnnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
53972720 |
gtattttttttttcaaacacaccaatatgtccattgatgctgacc-tttaatgattgtgctttcctcttcgctctgtg |
53972644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 19881645 - 19881468
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
19881645 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgt |
19881546 |
T |
|
| Q |
118 |
g--tannnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
| | |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
19881545 |
gtttttttttttttcaaacacaccaatatgtccattgatgctgacc-tttaatgattgtgctttcctcttcgctctgtg |
19881468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 37982995 - 37983097
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatcatgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
37982995 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatgt |
37983094 |
T |
|
| Q |
118 |
gta |
120 |
Q |
| |
|
||| |
|
|
| T |
37983095 |
gta |
37983097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 7473019 - 7472842
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatc--at |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || |
|
|
| T |
7473019 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatat |
7472920 |
T |
|
| Q |
116 |
gtgtannnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
7472919 |
gtgtatttttttttcaaacacaccaatatgtccattgatgctgacc-tttaatgattgtgctttccacttcgctctgtg |
7472842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 30442080 - 30441903
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatc--at |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
|
|
| T |
30442080 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatactttaaaatcatat |
30441981 |
T |
|
| Q |
116 |
gtgtannnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
|| || |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
30441980 |
gtttatttttttttcaaacacaccaatatgtccattgatgctgacc-tttaatgattgtgctttccacttcgctctgtg |
30441903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 9044389 - 9044567
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatc--at |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || |
|
|
| T |
9044389 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctgttaataaattgattgatactttaaaatcatat |
9044488 |
T |
|
| Q |
116 |
gtgta-nnnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
9044489 |
gtgtattttttttttcaaacacaccaatatgtccattgatgctgacc-tttaatgattgtgctttccacttcgctctgtg |
9044567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 43070916 - 43070740
Alignment:
| Q |
18 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgttgttaataaattgattgatgctttaaaatc--at |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| || |
|
|
| T |
43070916 |
acatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattatgctcttaataaattgattgatactttaaaatcatat |
43070817 |
T |
|
| Q |
116 |
gtgtannnnnnnnncaaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctttgctctgtg |
194 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||| |
|
|
| T |
43070816 |
gtgta-ttttttttcaaacacaccaatatgtccattgatgctgacc-tttaatgattgtgctttccacttcgctctgtg |
43070740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 33688159 - 33688105
Alignment:
| Q |
130 |
caaacacaccaatatgcccattgatgctgaccttttaatgattgtgctttcctctt |
185 |
Q |
| |
|
|||||||||||||||| | ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
33688159 |
caaacacaccaatatgtcgattgatgttgaccttt-aatgattgtgctttcctctt |
33688105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University