View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_5 (Length: 528)
Name: NF13209_low_5
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 13 - 513
Target Start/End: Original strand, 52784048 - 52784559
Alignment:
| Q |
13 |
aatatgtgttatattattaaagggagaagctgtgtgtaattcggtccttattggaaatcacataaggcgtaagtgatatccaataagaaccaatcacatt |
112 |
Q |
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| T |
52784048 |
aatatgtgttatattattaaagggagaagctgtgtgtaattcggtccttattggagatcacataaggcgtaagtgatatccgataagaaccaatcacatt |
52784147 |
T |
|
| Q |
113 |
taacat----catcattttgtgaatatgcttttcgcaacaacgggcattttcaaacaaaaaatgacaaaaggtgcataaaaatgtcagcatataaccaaa |
208 |
Q |
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| T |
52784148 |
taacatgcatcatcattttgtgaagatgcttttcgcgacaacgggcattttcaaacaaaaaatgacaaaaggttcataaaaatgtcagcatataaccaaa |
52784247 |
T |
|
| Q |
209 |
taaattctcacttgccacacaaagtagtaaaatgcccatgttcttgacggagctcgtatattagtgcttgcattacgctggtttataatttttgcattta |
308 |
Q |
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| T |
52784248 |
taaattctcacttgccacacaaagtagtaaaatgcccatgttcttgacggagctcgtatattagtgcttgcattacgctggtttataatttttgcattta |
52784347 |
T |
|
| Q |
309 |
tcatcgtaaattttttaaagtgc-------gatgtatcagctagagaaggagaggaggttaattgaatatttgtgacttttcttttcctctttgggtact |
401 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52784348 |
tcatcgtaaattttttaaagtgccatattagatgtatcagctagagaaggagaggaggttaattgaatatttgtgacttttcttttcctctttgggtact |
52784447 |
T |
|
| Q |
402 |
ataaaggagttaatttagctagataaaggcaataataagctagaaattaatcaactgtattattctacactacgttgcaaaatacaaaatctgcttgtgt |
501 |
Q |
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| T |
52784448 |
ataaaggagttaatttagctagataaaggcaataataagctagaaatcaatcatctgtattattctacactacgttgcaaaatacaaaatctgcttgtgt |
52784547 |
T |
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| Q |
502 |
agatgagataac |
513 |
Q |
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| T |
52784548 |
agatgagataac |
52784559 |
T |
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