View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13209_low_8 (Length: 501)
Name: NF13209_low_8
Description: NF13209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13209_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 485
Target Start/End: Complemental strand, 8174121 - 8173653
Alignment:
| Q |
16 |
atactgaagcccaagtggaacaaacggtttgatctgtcatcatatgataattaattgctattaaatttttgagtaaaaggggcataatagatggtaccnn |
115 |
Q |
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| T |
8174121 |
atactgaagcccaagtggaacaaacggtttgatctgtcatcatatgataattaattgctattaaatttttgagtaaaaggggcataatagatggtaccaa |
8174022 |
T |
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| Q |
116 |
nnnnnnnnngggccatgatggnnnnnnn-tgtttctttctagcttacataagaagaaattttttagtggacctagatttaagaacatgctaaaaacttgc |
214 |
Q |
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| T |
8174021 |
aaaaaaa--gggccatgatggaaaaaaaatgtttctttctagcttacataagaagaaattttatagtggacctagatttaagaacatgctaaaaacttgc |
8173924 |
T |
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| Q |
215 |
atattcgaatgccagatcgaaagagagctacattctttaattatcactattaaaagttatcttcatcttgaagttggaagatttgtctcaattattatag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8173923 |
atattcgaatgccagatcgaaagagagctacattctttaattatcactattaaaagttatcttcatcttgaagttggaagatttgtctcaattattatag |
8173824 |
T |
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| Q |
315 |
agtttaattatattgtacttgtaaagagtaagataccccacttgcgatgatggtaagtataggcattagtttctagtaatctcaaaagtgatggtttaag |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8173823 |
agtttaattatattgtacttgtaaagagtaagataccccacttgcgatgatggtaagtataggcattagtttctagtaatctcaaaagtgatggtttaag |
8173724 |
T |
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| Q |
415 |
aatgattttaaggtggatatttatagtgtttttggtccccttttagttgtagcaatctaaggggttgttta |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8173723 |
aatgattttaaggtggatatttatagtgtttttggtccccttttagttgtagcaatctaaggggttgttta |
8173653 |
T |
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