View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320A-Insertion-11 (Length: 832)

Name: NF1320A-Insertion-11
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320A-Insertion-11
NF1320A-Insertion-11
[»] chr4 (2 HSPs)
chr4 (202-832)||(53249522-53250155)
chr4 (8-164)||(53249328-53249484)


Alignment Details
Target: chr4 (Bit Score: 586; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 202 - 832
Target Start/End: Original strand, 53249522 - 53250155
Alignment:
Q  202 gtttacaagttgaacagatttaacagcattcagtattcaccatttagtacactcaatcgttccggtgccatcgtcaagtacaaacttaaattcagtaatc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249522 gtttacaagttgaacagatttaacagcattcagtattcaccatttagtacactcaatcgttccggtgccatcgtcaagtacaaacttaaattcagtaatc 53249621  T
Q  302 tgtccagatttgttgcaaaccctaccaacaagagtaacctgagcacaaaattgtgagaacaagaaaaaccacaaatcgtaattcacaatagaagattcga 401  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249622 tgtccagatttgttgcaaaccctaccaacaagagtaacctgaacacaaaattgtgagaacaagaaaaaccacaaatcgtaattcacaatagaagattcga 53249721  T
Q  402 gtaacgcacggtgttaacgccaacaccgtcaatagtaagaccggttctatcatcacttgattgaagagcatggttgatctgcttgatcgtcagcggaagc 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249722 gtaacgcacggtgttaacgccaacaccgtcaatagtaagaccggttctatcatcacttgattgaagagcatggttgatctgcttgatcgtcagcggaagc 53249821  T
Q  502 aaagtttgactttcgcgattctgaaaaagcaaataataaaccctaaaccacatcaattacatgaaaatcaaatcaaaaccctaaatcctaaacctagcgt 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249822 aaagtttgactttcgcgattctgaaaaagcaaataataaaccctaaaccacatcaattacatgaaaatcaaatcaaaaccctaaatcctaaacctagcgt 53249921  T
Q  602 gtctaattgaagttgcggttaagattattaagaagaaaatggagagtgagaactgagaagaaccttggagggagtgagagaggattcaccgccttgattg 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249922 gtctaattgaagttgcggttaagattattaagaagaaaatggagagtgagaactgagaagaaccttggagggagtgagagaggattcaccgccttgattg 53250021  T
Q  702 ctctgagaaggcatgaaaccgccgccggcgaa-gcggcgttgccgtcgaactgattcgcatgcatggtgccgaatttccgcgattgaaatgaagtga-tg 799  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  53250022 gtctgagaaggcatgaaaccgccgccggcgaaggcggcgttgccgtcgaactgattcgcatgcatggtgccgattttccgcgattgaaatgaagtgattg 53250121  T
Q  800 aacag-aagttcgaatttcgcaattcgctgtgtc 832  Q
    ||||| || |||||||||| || |||||||||||    
T  53250122 aacagaaatttcgaatttcacatttcgctgtgtc 53250155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 53249328 - 53249484
Alignment:
Q  8 aaaacctgattacacattaaccaagtatagtactaaatgcaatacaataaggcaacatacaatcccgtnnnnnnnnggtaacatacatgatactctccac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| ||||||||||||    
T  53249328 aaaacctgattacacattaaccaagtatagtactaaatgcaatacaataaggcaacatacaatcccgtaaagaaaaggtaacatacaagatactctccac 53249427  T
Q  108 tgccattgcatcagcaggttcgtgaagcctgcaagcagacaaaaactcatcgttcac 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249428 tgccattgcatcagcaggttcgtgaagcctgcaagcagacaaaaactcatcgttcac 53249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University