View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320A-Insertion-12 (Length: 730)
Name: NF1320A-Insertion-12
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320A-Insertion-12 |
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Alignment Details
Target: chr6 (Bit Score: 147; Significance: 4e-77; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 314 - 516
Target Start/End: Original strand, 31986238 - 31986440
Alignment:
| Q |
314 |
atgcttaaataaacttttgccctttaaaatttctcaattgttcgaatttgacctcatagtttcaattaagtgattatcgcccctcaaatttaaccaaaag |
413 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||| |||||||| |||| ||| ||||||||||||| |
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| T |
31986238 |
atgcttaaataaacttttgccctataaaatttctcaattgttcgattttgacctcgtagttacaattacgtgattatggcccatcatatttaaccaaaag |
31986337 |
T |
|
| Q |
414 |
tactcacaaaaatgatcaacacactttataactaaaggttttaccacctctggacaatcatctttagaaacgcatggaatgttagctgcgttttcaaaat |
513 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||| ||||||| || |
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| T |
31986338 |
tactcacaaaaatgatcaatacactttataactaaaggttttacaacctttggacaatcatctttagaaacacatggaatgttagctgcattttcaagat |
31986437 |
T |
|
| Q |
514 |
tag |
516 |
Q |
| |
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||| |
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|
| T |
31986438 |
tag |
31986440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 338 - 516
Target Start/End: Original strand, 31983627 - 31983805
Alignment:
| Q |
338 |
taaaatttctcaattgttcgaatttgacctcatagtttcaattaagtgattatcgcccctcaaatttaaccaaaagtactcacaaaaatgatcaacacac |
437 |
Q |
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|||||| ||||| |||||||| |||||||||||||||||||||| |||||||| | | |||| |||||||||||||||||||||||||||||||| |||| |
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| T |
31983627 |
taaaatctctcagttgttcgattttgacctcatagtttcaattacgtgattatggtctctcatatttaaccaaaagtactcacaaaaatgatcaatacac |
31983726 |
T |
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| Q |
438 |
tttataactaaaggttttaccacctctggacaatcatctttagaaacgcatggaatgttagctgcgttttcaaaattag |
516 |
Q |
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| T |
31983727 |
tttataactaaaggtgttatcacctttggacaatcatctttagaaacacatggaatgttagctgcattttcaaaattag |
31983805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 588 - 706
Target Start/End: Original strand, 31983881 - 31983999
Alignment:
| Q |
588 |
aaaaatggtatacttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaagcataaccaaacatgtgatattgagccattgttttcct-c |
686 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||||||||||| ||||||| | |
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| T |
31983881 |
aaaaatggcatacttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaaacaaaaacaaacatgagatattgagccatt-ttttcctcc |
31983979 |
T |
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| Q |
687 |
tttgcttgtaataaagagat |
706 |
Q |
| |
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||||| |||| || |||||| |
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| T |
31983980 |
tttgcatgtattagagagat |
31983999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 588 - 711
Target Start/End: Original strand, 31986515 - 31986639
Alignment:
| Q |
588 |
aaaaatggtatacttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaagcataaccaaacatgtgatattgagccattgttttcct-c |
686 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||| |||||||| |||| ||||||| | |
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| T |
31986515 |
aaaaatggtatacttatttccgccttttcaacaagaaatatagaaagaaggatgatcaaaacataaacaaacatgagatattgaaccatatttttcctcc |
31986614 |
T |
|
| Q |
687 |
tttgcttgtaataaagagatctttt |
711 |
Q |
| |
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||||| |||||||||||||| |||| |
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| T |
31986615 |
tttgcatgtaataaagagatttttt |
31986639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 31986131 - 31986222
Alignment:
| Q |
235 |
aatacagttaaattgaaaagtcagagaaacatacatcaaactttgaagcaaattaaaaacattatggtggataaataatatgcttaaataaac |
327 |
Q |
| |
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|||||| ||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||| |
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| T |
31986131 |
aatacaattaaattgaaa-gtcagagaaatataaatcaaactttgaagcaaattaaaaacattatgatgggtaaacaatatgcttaaataaac |
31986222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 587 - 703
Target Start/End: Complemental strand, 22470888 - 22470771
Alignment:
| Q |
587 |
taaaaatggtatacttatttccgcctttttaacaagaaactgagaaagaaggatgatcaaagcataaccaaacatgtgatattgagccattgttttcct- |
685 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||| ||| ||||| ||||||||||||||||||||| ||||| | | ||||||||||| ||||||| |
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| T |
22470888 |
taaaaatgtaatacttatttctgccttttcaacaataaattgagagagaaggatgatcaaagcataaagaaacacgaggtattgagccatatttttccta |
22470789 |
T |
|
| Q |
686 |
ctttgcttgtaataaaga |
703 |
Q |
| |
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| |||| ||||||||||| |
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|
| T |
22470788 |
cattgcatgtaataaaga |
22470771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 343 - 511
Target Start/End: Complemental strand, 22471129 - 22470957
Alignment:
| Q |
343 |
tttctcaattgttcgaatttgacctcatagtttcaattaagtgattatcgcccctcaaatttaacc----aaaagtactcacaaaaatgatcaacacact |
438 |
Q |
| |
|
||||||||||||||||||||||| | ||||| |||||| |||||||| |||||||| ||| | || ||||||||||||||| | ||| | ||||| |
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| T |
22471129 |
tttctcaattgttcgaatttgacttgctagttgcaattatgtgattatggcccctcatattcaccctccataaagtactcacaaaatttatctatacact |
22471030 |
T |
|
| Q |
439 |
ttataactaaaggttttaccacctctggacaatcatctttagaaacgcatggaatgttagctgcgttttcaaa |
511 |
Q |
| |
|
||||||||| |||||||| ||||| |||||| || | |||||| || |||||||| ||||| || ||||| |
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|
| T |
22471029 |
ttataactagaggttttatcacctgcggacaactttcgtcagaaacacaaggaatgttggctgcattgtcaaa |
22470957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 31986022 - 31986084
Alignment:
| Q |
6 |
caagaagacatgccatacaggctgatacactaactcctcacaatcatatgcaacatctcaaag |
68 |
Q |
| |
|
||||||||||||||||||| ||||| |||| |||| ||||||||||| | ||||||||||||| |
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|
| T |
31986022 |
caagaagacatgccatacaagctgacacaccaacttctcacaatcatctacaacatctcaaag |
31986084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 31981451 - 31981510
Alignment:
| Q |
284 |
aaattaaaaacattatggtggataaataatatgcttaaataaacttttgccctttaaaat |
343 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| ||| ||||||||||||||| | |||||| |
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|
| T |
31981451 |
aaattaaaaacactatgatggataaataatacgctcaaataaacttttgccatctaaaat |
31981510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 195
Target Start/End: Original strand, 31986085 - 31986119
Alignment:
| Q |
161 |
caatgagacaaagcttggtgaaggaaaatagaatg |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
31986085 |
caatgagacaaagcttggtgaaggaaaatagaatg |
31986119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 31981336 - 31981372
Alignment:
| Q |
149 |
aacataaaaatccaatgagacaaagcttggtgaagga |
185 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |
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| T |
31981336 |
aacatgaaaatccaatgagacaaagcttggtgaagga |
31981372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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