View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320A-Insertion-13 (Length: 390)
Name: NF1320A-Insertion-13
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320A-Insertion-13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 390
Target Start/End: Original strand, 34724461 - 34724819
Alignment:
| Q |
22 |
tactctgttttcaactataccttttagtaactacgaaggtgctaagtagctatacttcttccttgatacttcgtccttgtatagcctgcttcaaccttta |
121 |
Q |
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| T |
34724461 |
tactctttttccaactataccttttagtaactacgaaggtgctaagtagctatacttcttccttgatacttcgtccttgaatagactgcttcaaccttta |
34724560 |
T |
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| Q |
122 |
actttgcacatgtgtctgatgtttggacttgaccgagagatttatttgatagccgtgaagtaaattggac----nnnnnnnnnatgtaaactatgtatct |
217 |
Q |
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| T |
34724561 |
actttgcacatgtgtctgatgtttggacttgaccgagagatttatttgatagccgtgaagtaaattggactttttttttttatatgtaaactatgtatct |
34724660 |
T |
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| Q |
218 |
tctatgcattactataaaaactaatccctcaagttgggtccgtagaatcataattggtggcataactctccctcgagagatttataagggtcatttataa |
317 |
Q |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34724661 |
tctatgcattactataaaaactaa--------------tccgcagaatcataattggtggcataactctccctcaagagatttataagggtcatttataa |
34724746 |
T |
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| Q |
318 |
tgagttcaatgagcatgtactctgatatcagatgagaaaccaccatttatccatatcatagtctactaatctc |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34724747 |
agagttcaatgagcatgtactctgatatcagatgagaaaccaccatttatccatatcatactctactaatctc |
34724819 |
T |
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