View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320A-Insertion-14 (Length: 708)
Name: NF1320A-Insertion-14
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320A-Insertion-14 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 2310067 - 2309688
Alignment:
| Q |
8 |
atatataaggtaaaaacactaccacaacctcccaatttaatccatccaaatgtgacatattagattcagggctcattttctttctttctctttgcaatgc |
107 |
Q |
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| T |
2310067 |
atatataaggtaaaaaaactaccacaacctcccaatttaatccatccaaatgtgacatattagattcagggctcattttctttctttctctttgcaatgc |
2309968 |
T |
|
| Q |
108 |
atcaattatattattgagaatctttgtaggccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcawagccc |
207 |
Q |
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| T |
2309967 |
atcaattatattattgagaatctttgtatgccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccc |
2309868 |
T |
|
| Q |
208 |
tgcgtttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttcagaatagtaaaatctcttaggtcctccga |
307 |
Q |
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| T |
2309867 |
tgcgtttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttcagaagagtaaaatctcttaggtcctccga |
2309768 |
T |
|
| Q |
308 |
tgataaatggattgtgaaatttgttgttgatttcaactctttttgttgtgcctaatctgtaggaaaatgctatgaatcag |
387 |
Q |
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| T |
2309767 |
tgataaatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaatcag |
2309688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 443 - 708
Target Start/End: Complemental strand, 2309641 - 2309376
Alignment:
| Q |
443 |
ttagcttcttcaatggtcagattctgttaatcaatgttgtccattgtggattgcgaaaaataacattttgatcatattctatgttaaagcgccgctattt |
542 |
Q |
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| T |
2309641 |
ttagcttcttcaatgttcagattctgttaatcaatgttgtccattgtggattgcgaaaaataacattttgatcaaattctatgttaaagcaccgctattt |
2309542 |
T |
|
| Q |
543 |
gacaacacattgtacactgaataccatatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatgga |
642 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309541 |
gacaacacattgtacactgaataccatatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatgga |
2309442 |
T |
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| Q |
643 |
ctttagaggatttacgcacatgtgcgttgtggtgcccgactttgataattgattgtttcaagagag |
708 |
Q |
| |
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| T |
2309441 |
ctttagaggatttacgcacatgtgcgttgtggtgccgcactttgataattgattgtttcaagagag |
2309376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 2928981 - 2929356
Alignment:
| Q |
18 |
taaaaacactaccacaacctcccaatttaatccatccaaatgtgacatatta------gattcagggctcattttctttctttctctttgcaatgcatca |
111 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||||| || || |||||| |||||||||| ||||| ||||| ||||||||||| |
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| T |
2928981 |
taaaaaaactaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagcaatgcatca |
2929080 |
T |
|
| Q |
112 |
attatattattgagaatctttgtaggccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcawagccctgcg |
211 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
2929081 |
ataatattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccctttg |
2929180 |
T |
|
| Q |
212 |
tttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttca---gaatagtaaaatctcttaggtcctccgat |
308 |
Q |
| |
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|| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| || |
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| T |
2929181 |
ttacattcctctcaaaagttgttgctagacaaataaaacgggttcgtttcgtgtaaggaacagtttcaaataaagagtaaaatctcttgggtcctccaat |
2929280 |
T |
|
| Q |
309 |
gataaatggattgtgaaatttgttgttgatttcaactctttttgttgtgcctaatctgtaggaaaatgctatgaat |
384 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||| |
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| T |
2929281 |
gacaaatggattgtgaaatttgttgttgatttcaacatttcttgttgtgcctgatctgttagaaaatgctatgaat |
2929356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 469 - 699
Target Start/End: Complemental strand, 2318751 - 2318524
Alignment:
| Q |
469 |
ttaatcaatgttgtccattgtggattgcgaaaaataacattttgatcatattctat-gttaaagcgccgctatttgacaacacattgtacactgaatacc |
567 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| ||||||| | ||||||| |||| ||||||||||||||||||| ||||||||| || ||| |
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| T |
2318751 |
ttaatcaatgttgtccattgtggattgcaaaaaatcgcattttgtttgaattctattgttacagcgccgctatttgacaacgcattgtacaa--aacacc |
2318654 |
T |
|
| Q |
568 |
atatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatggactttagaggatttacgcacatgtgc |
667 |
Q |
| |
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|| |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||| | ||| |
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| T |
2318653 |
atttctcagaacaatagcggtttgttcagattctgctacactatagccactatgtgacagcgttgtgttaatggactttagaggatttatgcacttatgc |
2318554 |
T |
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| Q |
668 |
gttgtggtgcccgactttgataattgattgtt |
699 |
Q |
| |
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| |||||| ||||||||||||||||||| |
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| T |
2318553 |
g--gtggtgttgcactttgataattgattgtt |
2318524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 588 - 624
Target Start/End: Complemental strand, 16950266 - 16950230
Alignment:
| Q |
588 |
tttgttcagattctgctacactatagccactatttga |
624 |
Q |
| |
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|||||||| |||||||||| ||||||||||||||||| |
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| T |
16950266 |
tttgttcaaattctgctacgctatagccactatttga |
16950230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 574 - 622
Target Start/End: Original strand, 18749293 - 18749341
Alignment:
| Q |
574 |
cggaacaatagctgtttgttcagattctgctacactatagccactattt |
622 |
Q |
| |
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|||||||||||| ||||| || |||||||||||||||| ||||||||| |
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| T |
18749293 |
cggaacaatagcattttgtccaaattctgctacactataaccactattt |
18749341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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