View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320A-Insertion-15 (Length: 651)
Name: NF1320A-Insertion-15
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320A-Insertion-15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 324 - 651
Target Start/End: Original strand, 22424592 - 22424934
Alignment:
| Q |
324 |
atctattaaacactttatgtttgaaataacttttatttaattcaatcttcgtgatttttagaaaaggtttaaaaa-ttggaatttaacnnnnnnngacat |
422 |
Q |
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| T |
22424592 |
atctattaaacactttatgtttgaaataacttttatttaattcaatcttcgtcttttttaaaaaaggtttaaaaaattggaatttaactttttttgacat |
22424691 |
T |
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| Q |
423 |
tttgtttagaattatgcgattcagacaaacga--------------actgaatcgagttgttcataaactttatacgagtcaagctcaagctnnnnnnnt |
508 |
Q |
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| T |
22424692 |
ttttttaaaaattatgtgattcaaacaaacgagctgaacttaacgaactgaatcgagttgttcataaactttatacgagtcaagctcaagctaaaaaaat |
22424791 |
T |
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| Q |
509 |
gatttgtatcaaactcgagttgagttttaagctaaacaaattcttattgagtcgagctctgacgagactcatttctagccctacttctgatgcatatcta |
608 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
22424792 |
aatttgtatcaaactcgagttgagttttaaactaaacaaattcttattgagtcgagctctgacgagactcatttctaaccctacttctgatgcatatcta |
22424891 |
T |
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| Q |
609 |
cgatacaaggttttcttggaaatcccaaatggtctatgagcat |
651 |
Q |
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| T |
22424892 |
cgatacaaggttttcttgaaaatcccaaagggtctatgagcat |
22424934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 22424275 - 22424480
Alignment:
| Q |
6 |
catctcctacaaatgccaaaggtgaaggtgttgaattaatggataagatccttagagtagacttggatgatgctatggtcgagtgtgacagaccgaaagg |
105 |
Q |
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| T |
22424275 |
catctcctacaaatgccaaagatgaaggt-ttgaattaatggataagttccttagagtagacctggatgatgccatggtcgagtgtgacagaccgaaagg |
22424373 |
T |
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| Q |
106 |
gggtcatgcaaccttcaaatggcttcaagaaattttccacaaaaatatgaacaaagccgttgagtttgagaattggcaggaggtggagggttttagagat |
205 |
Q |
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| T |
22424374 |
ggatcatgcaaccttcaaatggcttcaagaaattttccacaaaaatatgaacaaagccattgagtttgagaattggcaggaggtggagggttttagagat |
22424473 |
T |
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| Q |
206 |
tgtaata |
212 |
Q |
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||||||| |
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| T |
22424474 |
tgtaata |
22424480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 515 - 567
Target Start/End: Original strand, 54625820 - 54625872
Alignment:
| Q |
515 |
tatcaaactcgagttgagttttaagctaaacaaattcttattgagtcgagctc |
567 |
Q |
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| T |
54625820 |
tatcgaacccgagttgagttttgagttgaaccaattcttattgagtcgagctc |
54625872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 511 - 573
Target Start/End: Original strand, 19561448 - 19561510
Alignment:
| Q |
511 |
tttgtatcaaactcgagttgagttttaagctaaacaaattcttattgagtcgagctctgacga |
573 |
Q |
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| T |
19561448 |
tttgtatcgaactcgaatcgagttttgaactaaactaattcttatcgagtcgagctcagacga |
19561510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 564
Target Start/End: Complemental strand, 21180663 - 21180610
Alignment:
| Q |
511 |
tttgtatcaaactcgagttgagttttaagctaaacaaattcttattgagtcgag |
564 |
Q |
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| T |
21180663 |
tttgtatcaaactcgagttgaattttaaaccaaattaattcttatcgagtcgag |
21180610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 567
Target Start/End: Complemental strand, 28430645 - 28430592
Alignment:
| Q |
514 |
gtatcaaactcgagttgagttttaagctaaacaaattcttattgagtcgagctc |
567 |
Q |
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| T |
28430645 |
gtatcgaactcgagtcgagttttgagctgaactaattcttatcgagtcgagctc |
28430592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 564
Target Start/End: Complemental strand, 33627615 - 33627562
Alignment:
| Q |
511 |
tttgtatcaaactcgagttgagttttaagctaaacaaattcttattgagtcgag |
564 |
Q |
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| T |
33627615 |
tttgtatcaaacttgagttgagtttcaaaataaactaattcttatagagtcgag |
33627562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 567
Target Start/End: Complemental strand, 36118324 - 36118268
Alignment:
| Q |
511 |
tttgtatcaaactcgagttgagttttaagctaaacaaattcttattgagtcgagctc |
567 |
Q |
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|||||||| |||| |||||||||||| |||| || ||||||||| ||||||||||| |
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| T |
36118324 |
tttgtatcgaacttgagttgagttttgagctgaatcaattcttatcgagtcgagctc |
36118268 |
T |
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