View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320A-Insertion-17 (Length: 702)
Name: NF1320A-Insertion-17
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320A-Insertion-17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 7 - 702
Target Start/End: Complemental strand, 36289431 - 36288735
Alignment:
| Q |
7 |
actaatgttaccaattaaaaataatgaatcttttctttacctaaatcagaatcagcaagacgaatgttgagtgtatttccttgattttctaacctttgaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289431 |
actaatgttaccaattaaaaataatgaatcttttctttacctaaatcagaatcagcaagacgaatgttgagtgtatttccttgattttctaacctttgaa |
36289332 |
T |
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| Q |
107 |
catcaactaactccccatgccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaatcctt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289331 |
aatcaactaactccccatgccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaatcctt |
36289232 |
T |
|
| Q |
207 |
actatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactattaccacctctctca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289231 |
actatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactattaccacctctctca |
36289132 |
T |
|
| Q |
307 |
ctcttcaatggagtcatcctctcacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatgcatttgcacaaac |
406 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289131 |
ctcttcaatggagtcatcctcttacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatgcatttgcacaaac |
36289032 |
T |
|
| Q |
407 |
ttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaggctcacttagtatcacattccattctttctcttc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36289031 |
ttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaggctcacttagtatcacattccattctttctcttc |
36288932 |
T |
|
| Q |
507 |
ttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttaccttatcactattttccaatgcttcatatacaaaatacctttctcca |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288931 |
ttcattccacctgaattgtctctcatatccatcatatccaagttggaaccttaccttatcactattttccaatgcttcatatacaaaatacctttctcca |
36288832 |
T |
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| Q |
607 |
ttatcatttgtattaagcctaaaaccaaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaat-accacttctccacc |
702 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36288831 |
gtatcatttgtattaagcctaaaaccaaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaataaccacttctccacc |
36288735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 14521216 - 14521329
Alignment:
| Q |
102 |
ttgaacatcaactaactccccatgccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaa |
201 |
Q |
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||||||||| || || || ||||||||||||||||| ||||||||| | | | | |||| |||||||||||| ||||| || |||||| ||||||||| |
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| T |
14521216 |
ttgaacatcgaccaaatctccatgccaaaccatacaaccaattccagttacttctgcataagcagtacaagaagcattctccaaacaattaccttcacaa |
14521315 |
T |
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| Q |
202 |
tccttactatcaac |
215 |
Q |
| |
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|||||| ||||||| |
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| T |
14521316 |
tccttagtatcaac |
14521329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 194 - 594
Target Start/End: Original strand, 12096373 - 12096773
Alignment:
| Q |
194 |
cttcacaatccttactatcaacagcactcaccaaacgtgcaaaatcaggtaacttcaaacccttttgcaccaaaaaaccatcatctccaccagaactatt |
293 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| ||||||||| ||||||| |
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| T |
12096373 |
cttcacaatccttactatctgcagcactcaccaaacgtgcaaaatcaggcaacttcaaaatcctttgcaccaaaaaaccatcttctccaccaaaactatt |
12096472 |
T |
|
| Q |
294 |
accacctctctcactcttcaatggagtcatcctctcacacccttttgaccaattcccactattccaacttttcacatcccttggttcaaacccttttatg |
393 |
Q |
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|| |||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
12096473 |
actgcctctctcacccttcaatggaatcatcctcttacacccttttgaccaattcccactatcccaacttttcacatcctttggctcaaacccttttatg |
12096572 |
T |
|
| Q |
394 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaggctcacttagtatcacattcc |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| | |
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| T |
12096573 |
catttgcacaaacttgaatcagacatatcacatattgcaaaactaccacatgaattataaaactcacacttcttattaagctcactttgtaacacattgc |
12096672 |
T |
|
| Q |
494 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatatccaagctggaaccttaccttatcactattttccaatgcttcatatacaaa |
593 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| || |||||| |||||||||||||||||||||| ||| |
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| T |
12096673 |
attctttctcttcttcattccacctgaattgtctctcatatccatcatacccaagctgaaaccgtatcttatccctattttccaatgcttcatataaaaa |
12096772 |
T |
|
| Q |
594 |
a |
594 |
Q |
| |
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| T |
12096773 |
a |
12096773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 633 - 702
Target Start/End: Original strand, 12096769 - 12096839
Alignment:
| Q |
633 |
aaaaagataacttcctgtcatatttggtacacctgtgaaaactctaccatcccaat-accacttctccacc |
702 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12096769 |
aaaaagatatcttcctgtcatatttggcacacctgtgaaaactctaccatcccaataaccacttctccacc |
12096839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 2692142 - 2692243
Alignment:
| Q |
102 |
ttgaacatcaactaactccccatgccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaa |
201 |
Q |
| |
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|||||||||||| || || |||| ||||| |||||| ||||||||||| | | | |||| |||||||||||| |||||| || |||||| ||||||||| |
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| T |
2692142 |
ttgaacatcaaccaaatctccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaa |
2692241 |
T |
|
| Q |
202 |
tc |
203 |
Q |
| |
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|| |
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| T |
2692242 |
tc |
2692243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 2699847 - 2699942
Alignment:
| Q |
108 |
atcaactaactccccatgccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaatc |
203 |
Q |
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|||||| || || |||| |||||||||||| |||||||||||| | | | |||| ||||||||||||| ||||| | |||||| |||| |||||| |
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| T |
2699847 |
atcaaccaaatctccataccaaaccatacaaccaattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacctttacaatc |
2699942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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