View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320A-Insertion-19 (Length: 772)
Name: NF1320A-Insertion-19
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320A-Insertion-19 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0267 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 369 - 772
Target Start/End: Complemental strand, 3838913 - 3838512
Alignment:
| Q |
369 |
atggctcgaggaaaatgataatgtcttgtgaatttggtaacagattattgtattaacatcgtcattatggatattggttgttccatatatattgatgagt |
468 |
Q |
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||||| |||||||||||||||| ||||| ||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |
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| T |
3838913 |
atggcccgaggaaaatgataatttcttgaaaatttggaaacggaatattgtattaacatcgtcattatggatcttggttgttccatctatattgacgagt |
3838814 |
T |
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| Q |
469 |
taaagttgtttgattatgttgtcatgtgtttcgttcaatcttaaattaatggccaagattgttcactacatgtagtagcatataaaagcatatcgaatag |
568 |
Q |
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| T |
3838813 |
taaagcagtttgattaagttgtaatttgtttcgttcaatcttaaattaatggccgagattgctgactacat---gtagcatataaaagcatgttgaatag |
3838717 |
T |
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| Q |
569 |
gtcagtttagcttcaacttcataaggagaagaaaactaaaccaataaataacagtcgttttaaaattaattggttcaaatatttttactaaattcaaacc |
668 |
Q |
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| T |
3838716 |
gtcaatttagcttgaacttcataacgagaagaaaattaaaccaataaataacagtcgattttaaattaattggttcaaatatttttactaaattcaaacc |
3838617 |
T |
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| Q |
669 |
-aaccaactctacgaaacatacattttacaatttttaagattgttcccaactcctgcatccaacttccacttaataaattggttatgaattataaccgga |
767 |
Q |
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| T |
3838616 |
aaaccaactctacaaaacatacattttacaatttttaagattgttcccaactcctgcatccaacttccacttactaaattggttatgaattataacctga |
3838517 |
T |
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| Q |
768 |
agttc |
772 |
Q |
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| T |
3838516 |
agttc |
3838512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 3839290 - 3838959
Alignment:
| Q |
8 |
cctagaaaattagcaagctatcgattctcaactaagttattgagagaattacgcagattagtgttcaaatccagtgcagtaaaacttgtaggataatgtc |
107 |
Q |
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| T |
3839290 |
cctagaaaattagcaagctatcgattctcaactaagttattgagagaattaggcagatccgtgttcaaatccagtgcagtaaaacttgtaggataatgtc |
3839191 |
T |
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| Q |
108 |
tgaagctgcaatctcaaacaataatattatagagctgtatgtgacatgttatctgattgaatgctatagggacaatttaaaatacaacagcaatcactct |
207 |
Q |
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| T |
3839190 |
tgaagctgcaatctcaaacaataatct--caaacttgtatgtgacatgttatctgattgaatgct---------atttaaaatacaacaacaatcactc- |
3839103 |
T |
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| Q |
208 |
atattgttaattgcaacaatttacaatgagtgttgttccctccttgctgcagtc-aacttccaccagataaactgattgaatatatattgttacttcaaa |
306 |
Q |
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| T |
3839102 |
-tattgttacttgcagcaatttaaaatgagtgttgttccctccttgctgcaaactaacttccaccagataaactgattgaatatatattgttactttaaa |
3839004 |
T |
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| Q |
307 |
ttctacctaagaccgacaaagattataccgaacaatgggtttatc |
351 |
Q |
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| T |
3839003 |
ttctgcccaagaccgacagagattgaaccgaacaataggtttatc |
3838959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 376 - 772
Target Start/End: Complemental strand, 14388 - 13993
Alignment:
| Q |
376 |
gaggaaaatgataatgtcttgtgaatttggtaacagattattgtattaacatcgtcattatggatattggttgttccatatatattgatgagttaaagtt |
475 |
Q |
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| T |
14388 |
gaggaaaatgataatttcttgtaaatttggaaacggaatattgtattaacatcgtcattgtggatcttggttgttccatctataatgatgagttaaagca |
14289 |
T |
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| Q |
476 |
gtttgattatgttgtcatgtgtttcgttcaatcttaaattaatggccaagattgttcactacatgtagtagcatataaaagcatatcgaataggtcagtt |
575 |
Q |
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| T |
14288 |
gtttgattaagttgtaatttgtttcattcaatcttaaattaatggccgagattgctgactacat---gtagcatataaaagcatattcaataggtcaatt |
14192 |
T |
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| Q |
576 |
tagcttcaacttcataaggagaagaaaactaaaccaataaataacagtc-gttttaaaattaattggttcaaatatttttactaaattcaaacc-aacca |
673 |
Q |
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| T |
14191 |
tagcttgaacttcataacgagaagaaaattaaaccaataaataacagtcggttttaaaattaattggttcaaatatttttactaaattcaaaccaaacca |
14092 |
T |
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| Q |
674 |
actctacgaaacatacattttacaatttttaagattgttcccaactcctgcatccaacttccacttaataaattggttatgaattataaccggaagttc |
772 |
Q |
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| T |
14091 |
actctacaaaacatacattttacaatttttaagattgttcccaactcctgcatccaacttccacttactaaattggttatgaattataacctgaagttc |
13993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 14772 - 14437
Alignment:
| Q |
8 |
cctagaaaattagcaagctatcgattctcaactaagttattgagagaattacgcagattagtgttcaaatccagtgcagtaaaacttgtaggataatgtc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14772 |
cctagaaaattagcaagctatcgattctcaactaagttattgagagaattaggcagatccgtgttcaaatccagtgcagtaaaacttgtaggataatgtc |
14673 |
T |
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| Q |
108 |
tgaagctgcaatctcaaacaataatattatagagctgtatgtgacatgttatctgattgaatgctatagggacaatttaaaatacaacagcaatcactct |
207 |
Q |
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| T |
14672 |
tgaagctgcaatctcaaacaataatct--caaacttgtatgtgacatgttatctgattgaatgct---------atttaaaatacaacaacaatcactc- |
14585 |
T |
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| Q |
208 |
atattgttaattgcaacaatttacaatgagtgttgttccctccttgctgcagtc-aacttccaccagataaactgattgaatatatattgttacttcaaa |
306 |
Q |
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| T |
14584 |
-tattgttacttgcagcaatttaaaatgagtgttgttccctccttgctgcaaactaacttccaccagataaactgattgaatatatattgttactttaaa |
14486 |
T |
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| Q |
307 |
ttctacctaagaccgacaaagattataccgaacaatgggtttatcgaat |
355 |
Q |
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| T |
14485 |
ttctgcccaagaccgacagagattgaaccgaacaataggtttatcgaat |
14437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 46165431 - 46165556
Alignment:
| Q |
11 |
agaaaattagcaagctatcgattctcaactaagttattgagagaattacgcagattagtgttcaaatccagtgcagtaaaacttgta-ggataatgtctg |
109 |
Q |
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| T |
46165431 |
agaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgtctg |
46165530 |
T |
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| Q |
110 |
aagctgcaatctcaaacaataatatt |
135 |
Q |
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||||||||| ||||||||||| |||| |
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| T |
46165531 |
aagctgcaacctcaaacaatattatt |
46165556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 46237795 - 46237719
Alignment:
| Q |
19 |
agcaagctatcgattctcaactaagttattgagagaattacgcagattagtgttcaaatccagtgcagtaaaacttg |
95 |
Q |
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||||||||||| |||||||||||||||||||||||| || |||| | | |||| ||||| | ||| |||||||||| |
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| T |
46237795 |
agcaagctatcaattctcaactaagttattgagagacttcagcagctcactgtttaaatctaatgcggtaaaacttg |
46237719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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