View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320A-Insertion-20 (Length: 725)

Name: NF1320A-Insertion-20
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320A-Insertion-20
NF1320A-Insertion-20
[»] chr8 (1 HSPs)
chr8 (7-725)||(33645031-33645746)


Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 7 - 725
Target Start/End: Original strand, 33645031 - 33645746
Alignment:
Q  7 agttgcctgcagcttctcttaatagacgctttaccgtcaattgttttgtcagccatgacgaacgacgtttggcgaagtagcatagtagagacagtacagc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645031 agttgcctgcagcttctcttaatagacgctttaccgtcaattgttttgtcagccatgacgaacgacgtttggcgaagtagcatagtagagacagtacagc 33645130  T
Q  107 tgttatggaggctccaactgtgatcactgcaaacaatcatgtagcattgatcaaaattctacatgaccaaagaaaatcataaaagctaatgagtcctagg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645131 tgttatggaggctccaactgtgatcactgcaaacaatcatgtagcattgatcaaaattctacatgaccaaagaaaatcataaaagctaatgagtcctagg 33645230  T
Q  207 gttggaaaatattgagattgtacctccaagaagtacaccaattctgagtgcctttccacatttgctagacccaagtgttgaaggactgcaacgtgaaact 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33645231 gttggaaaatattgagattgtacctccaagaagtacaccaattctgagtgcctttccacatttgctagacccaagtgttgaaggactgcaacgtgaaact 33645330  T
Q  307 gatgataaggcaaacacataaaacatggattagaaaagtttaaatatttatcactatactcaaggaaaatcaaatagttagtagtactgcagtcactaat 406  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33645331 gatgataaggcaaacacataaaacatggattagaaaagttcaaatatttagcactatacttaaggaaaatcaaatagttagtagtactgcagtcactaat 33645430  T
Q  407 tatcggatttggattccaccaagtaaacgtacgacacatttatttgatttcctaaagatcaacgtatatgcttccttatctcaaatcaacggtaaatatt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     ||||    ||         |  |||||||||||||| ||||||||    
T  33645431 tatcggatttggattccaccaagtaaacgtacgacacatttatttgattt-----agat----gt---------ccaatctcaaatcaacgataaatatt 33645512  T
Q  507 atttaaagatgatttggtaaagatcaacgtttatgcttcctgatctcaaatcaatgaccgaaatcaactaaagttttacgatttaat------------- 593  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||                 
T  33645513 atttaaagatgatttggtaaagatcaacgtttatgcttcttgatctcaaatcaatgaccgaaatcaactaagattttacaatttaatgttacatgtcaat 33645612  T
Q  594 -aaaggtattgaggttgatttcctgatccttcacatggtgaatatatctatcactcactaatctctctccgatgaccacttataat-aaaaatccattag 691  Q
      |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  33645613 ataaggtattcaggttgatttcctaatccttcacatggtgaatatatctatcactcactaatctctctcctatgaccacttataataaaaaattcattag 33645712  T
Q  692 accagccatgtgctttacctaatattgatctata 725  Q
    ||||||||||||||||||||||||||||||||||    
T  33645713 accagccatgtgctttacctaatattgatctata 33645746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University