View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320A-Insertion-22 (Length: 479)
Name: NF1320A-Insertion-22
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320A-Insertion-22 |
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| [»] scaffold0122 (2 HSPs) |
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Alignment Details
Target: scaffold0122 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: scaffold0122
Description:
Target: scaffold0122; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 6602 - 6354
Alignment:
| Q |
8 |
taaggggaccattctctgttaaactcagctcttccaccggtagaaccctatcatctatagatgttgtccctagcaattgggttccaaaggccacttacac |
107 |
Q |
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| T |
6602 |
taaggggaccattctctgtcaaactcagctcttccaccggtagaaccctatcagctagagatgttgttcctagcaattgggttccaaaggccacttacac |
6503 |
T |
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| Q |
108 |
ttctcgcctaaatttctaccactaaaacacaacctttgcaataaccacattttacctagttaattagttaaagtttgggtaggtcccatagcgcaaacat |
207 |
Q |
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| T |
6502 |
ttctcgcctaaatttctaccactaaaacacaacctttgcaataaccacattttacctagttaattaattaaagtttggttaggtcccataacgcaaaaat |
6403 |
T |
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| Q |
208 |
agttcacatgggttcccaactctctttcccttagtttgctatatatataca |
258 |
Q |
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| T |
6402 |
agttcacatgggttcccaa--ctctttcccttagtttgctatatatataca |
6354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0122; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 310 - 479
Target Start/End: Complemental strand, 6302 - 6130
Alignment:
| Q |
310 |
gtaagcaaagtagtcaagccattgaattgcacaagggcattcaatggtccttctcatttcttgtttctccttttgtt---gtatacctaattttattatg |
406 |
Q |
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| T |
6302 |
gtaagcaaagtagtcaagccattgaattgcacaagggcattcaatggtccttcccttttcttgtttctccttttgtttttgtatacctaattttattatg |
6203 |
T |
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| Q |
407 |
gtgtgttattgttggtagtaaatgtcatgtagccctctcccaaactggagagagagcgtgtagggttgtatcc |
479 |
Q |
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| T |
6202 |
gtgtgttattgttggtagtaaatgtcatgtagccctctccaaaactggagagagagcgtgtagggttgtatcc |
6130 |
T |
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