View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320A-Insertion-23 (Length: 783)

Name: NF1320A-Insertion-23
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320A-Insertion-23
NF1320A-Insertion-23
[»] chr4 (7 HSPs)
chr4 (89-783)||(50111789-50112478)
chr4 (102-259)||(50078018-50078178)
chr4 (350-527)||(49106939-49107117)
chr4 (416-527)||(50077909-50078020)
chr4 (270-351)||(49107391-49107472)
chr4 (8-64)||(50111692-50111748)
chr4 (178-218)||(49107641-49107681)
[»] chr8 (4 HSPs)
chr8 (529-772)||(44250055-44250302)
chr8 (605-723)||(44249964-44250082)
chr8 (605-746)||(44253555-44253692)
chr8 (178-273)||(40053504-40053599)
[»] chr6 (2 HSPs)
chr6 (102-259)||(10796428-10796588)
chr6 (416-527)||(10796319-10796430)
[»] chr2 (1 HSPs)
chr2 (456-522)||(43849695-43849761)


Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 89 - 783
Target Start/End: Original strand, 50111789 - 50112478
Alignment:
Q  89 gatatgtagttaacaccagatctgttcctccattggctgtggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttct 188  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50111789 gatatgtagttaacaccagatctgttcctccattggcagtggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttct 50111888  T
Q  189 agcaacattaattttgcataaaacctatttctgcgactgtgtgataattttgaagttaaatttgttcctaaatacacattagtatagcagcatcagtata 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50111889 agcaacattaattttgcataaaacctatttctgcgactgtgtgataattttgaagttaaatctgttcctaaatacacattagtatagcagcatcagtata 50111988  T
Q  289 ccaagttttaaagtaagcaacagatacaagatggataaattccaccacacaaaaaggaaaaatgatagaaagc-caatgtttatagcttaaagtaataag 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50111989 ccaagttttaaagtaagcaacagatacaagatggataaattccaccacacaaaaaggaaaaatgatagaaagcgcaatgtttatagcttaaagtaataag 50112088  T
Q  388 tattgtttgaattaatgacaagggaaattaactcagatgattgtgatgataatgtcaagtaacagagaattttgtagcataaaagaatcacaagttatga 487  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  50112089 tattgtttgaattaataacaagggaaattaactcagatgattgtgatgataatgtcaagtaaaagagaattttgtagcataaaagaatcacaagttatga 50112188  T
Q  488 agtgaattcccaaattgtgaacgtagccttaaactcttcatatgacaaaaagatagcaattggctgcatgaggaattaac-tactgtttcttatagataa 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  50112189 agtgaattcccaaattgtgaacgtagccttaaactcttcatatgacaaaaagatagcaattggctgcatgaggaattaacgtactgtttcttatagataa 50112288  T
Q  587 gatcggagggagtatttatttagacaaaacgtcttaattgaaaagcttcttttttaggaaaagaaaaatatcattactgattctattactattcttcttc 686  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |          ||||||||||    
T  50112289 gatcggagggagtatttatttaggcaaaacgtcttaattgaaaagcttcttttttaggaaaagaaaaatatcattaataa----------attcttcttc 50112378  T
Q  687 aaacata-gaatgacaaaaggatagcaattggctggcacga-gaattaacatactctcatttactacattatttggcccttcatgtatc-tggaatttgg 783  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  50112379 aaacataggaatgacaaaaggatagcaattggctggcacgaggaattaacatactctcatttactatattatttggcccttcatgtatcttggaatttgg 50112478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 50078178 - 50078018
Alignment:
Q  102 caccagatctgttcctccattggctgt---ggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacatta 198  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50078178 caccagatctgttcctccattggcagtagtggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacatta 50078079  T
Q  199 attttgcataaaacctatttctgcgactgtgtgataattttgaagttaaatttgttcctaa 259  Q
    |||||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||    
T  50078078 attttgcataaaatttatttctgtgactgtgtgataatttttaagttaaatttgttcctaa 50078018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 350 - 527
Target Start/End: Complemental strand, 49107117 - 49106939
Alignment:
Q  350 atgatagaaagc-caatgtttatagcttaaagtaataagtattgtttgaattaatgacaagggaaattaactcagatgattgtgatgataatgtcaagta 448  Q
    |||||||||||  |||||||| ||||||| |||||||| ||||||||| |||||| || | |||||||  ||||  ||||||||||||||||||||||||    
T  49107117 atgatagaaagggcaatgtttgtagcttagagtaataaatattgtttggattaataaccatggaaattccctcaattgattgtgatgataatgtcaagta 49107018  T
Q  449 acagagaattttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagccttaaactcttca 527  Q
    || ||||||||||||||||||||| || |||||||||||||| ||||||| ||||||||| ||||||||| ||| ||||    
T  49107017 acggagaattttgtagcataaaagtattacaagttatgaagtaaattccctaattgtgaaagtagccttacacttttca 49106939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 416 - 527
Target Start/End: Complemental strand, 50078020 - 50077909
Alignment:
Q  416 taactcagatgattgtgatgataatgtcaagtaacagagaattttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagcc 515  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||||    
T  50078020 taactcagatgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagcc 50077921  T
Q  516 ttaaactcttca 527  Q
    ||||||| ||||    
T  50077920 ttaaacttttca 50077909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 49107472 - 49107391
Alignment:
Q  270 gtatagcagcatcagtataccaagttttaaagtaagcaacagatacaagatggataaattccaccacacaaaaaggaaaaat 351  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||    
T  49107472 gtatagcagcatgagtataccaagttttaaagtaagcaagagatacaagatgtatcaattccaccacacaaaaaggaaaaat 49107391  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 50111692 - 50111748
Alignment:
Q  8 agaagagccttctgctgcagtcatcgagcctagtcaggaagtgcccacgaggagtca 64  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50111692 agaagagccttctgctgcagtcatcgagcctagtcaggaaatgcccacgaggagtca 50111748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 49107681 - 49107641
Alignment:
Q  178 tgcttctttctagcaacattaattttgcataaaacctattt 218  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  49107681 tgcttctttctagcaacattaattttgcataaaatctattt 49107641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 529 - 772
Target Start/End: Original strand, 44250055 - 44250302
Alignment:
Q  529 atgacaaaaagatagcaattggctg-catgaggaattaac-tactgtttcttatagataagatcggagggagtatttatttagacaaaacgtcttaattg 626  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44250055 atgacaaaaagatagcaattggctggcatgaggaattaacgtaccgtttcttatagataagatcggagggagtatttatttaggcaaaacgtcttaattg 44250154  T
Q  627 aaaagcttcttttttaggaaaagaaaaatatcattactgattctattactattcttcttcaaacata-gaatgacaaaaggatagcaattggctggcacg 725  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||||| || |||||    
T  44250155 aaaagcttcttttttaggaaaagaaaaatatcattactgattctattaccattctttttcaaacataggaatgacaaaaagatagcaattgactagcacg 44250254  T
Q  726 a-gaattaacatactctcatttactacattatttggcccttcatgtat 772  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||    
T  44250255 aggaattaacatactctcatttactacattatttggcccttcatgtat 44250302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 605 - 723
Target Start/End: Original strand, 44249964 - 44250082
Alignment:
Q  605 tttagacaaaacgtcttaattgaaaagcttcttttttaggaaaagaaaaatatcattactgattctattactattcttcttcaaacata-gaatgacaaa 703  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||| |||||||||| ||||||||||    
T  44249964 tttaggcaaaacgtcttaattgaaaagcttcttttttaggaaaagaaaaatttcatta-tgattatattactgttctttttcaaacatatgaatgacaaa 44250062  T
Q  704 aggatagcaattggctggca 723  Q
    | ||||||||||||||||||    
T  44250063 aagatagcaattggctggca 44250082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 605 - 746
Target Start/End: Original strand, 44253555 - 44253692
Alignment:
Q  605 tttagacaaaacgtcttaattgaaaagcttcttttttaggaaaagaaaaatatcattactgattctattactattcttcttcaaacata-gaatgacaaa 703  Q
    ||||| |||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||      |||||||| |||||||||| ||| |||||     
T  44253555 tttaggcaaaacgtcttaattgaaaagcttcttttttaggaagaaaaaaata-cattacttatt------ctattctttttcaaacataggaaagacaag 44253647  T
Q  704 aggatagcaattggctggcacga-gaattaa-catactctcattt 746  Q
    |||||||||||||||||| |||| ||||||| ||||||| |||||    
T  44253648 aggatagcaattggctggaacgaggaattaaccatactcccattt 44253692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 178 - 273
Target Start/End: Original strand, 40053504 - 40053599
Alignment:
Q  178 tgcttctttctagcaacattaattttgcataaaacctatttctgcgactgtgtgataattttgaagttaaatttgttcctaaatacacattagtat 273  Q
    ||||| ||||||||||||| |||||||| ||||| ||||| ||  ||||| ||||||||||||||||||  ||||||||||| || ||||||||||    
T  40053504 tgcttgtttctagcaacataaattttgcctaaaatctattcctaagactgcgtgataattttgaagttatgtttgttcctaagtatacattagtat 40053599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 10796588 - 10796428
Alignment:
Q  102 caccagatctgttcctccattggctgt---ggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacatta 198  Q
    |||||||||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10796588 caccagatctgttcctccattggcagtagtggtggaatgtggcttagcatgaggaaaatcggttacacaccatccttgctgcttctttctagcaacatta 10796489  T
Q  199 attttgcataaaacctatttctgcgactgtgtgataattttgaagttaaatttgttcctaa 259  Q
    |||||||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||    
T  10796488 attttgcataaaatttatttctgtgactgtgtgataatttttaagttaaatttgttcctaa 10796428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 416 - 527
Target Start/End: Complemental strand, 10796430 - 10796319
Alignment:
Q  416 taactcagatgattgtgatgataatgtcaagtaacagagaattttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagcc 515  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||||    
T  10796430 taactcagatgattgtgatgataatgtcaagtaatagagaattttgtagcataaaagaatcacaagttctgaagtgaattccctgattatgaacgtagcc 10796331  T
Q  516 ttaaactcttca 527  Q
    ||||||| ||||    
T  10796330 ttaaacttttca 10796319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 456 - 522
Target Start/End: Original strand, 43849695 - 43849761
Alignment:
Q  456 attttgtagcataaaagaatcacaagttatgaagtgaattcccaaattgtgaacgtagccttaaact 522  Q
    |||||||||  |||||||||||||| |||||||||||||| ||  ||||||||||||||||| ||||    
T  43849695 attttgtagtgtaaaagaatcacaaattatgaagtgaatttcctgattgtgaacgtagccttcaact 43849761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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