View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320A-Insertion-27 (Length: 105)

Name: NF1320A-Insertion-27
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320A-Insertion-27
NF1320A-Insertion-27
[»] chr6 (8 HSPs)
chr6 (8-105)||(1442097-1442194)
chr6 (9-92)||(1470925-1471008)
chr6 (11-105)||(176302-176396)
chr6 (49-97)||(370782-370830)
chr6 (49-105)||(7564740-7564796)
chr6 (38-92)||(1459543-1459597)
chr6 (39-92)||(1453842-1453895)
chr6 (39-92)||(1465534-1465587)
[»] chr7 (1 HSPs)
chr7 (49-92)||(3927065-3927108)
[»] chr4 (3 HSPs)
chr4 (38-92)||(55419777-55419831)
chr4 (49-99)||(20019767-20019817)
chr4 (55-99)||(20016180-20016224)
[»] chr3 (13 HSPs)
chr3 (53-99)||(2442049-2442095)
chr3 (49-94)||(9608344-9608389)
chr3 (49-92)||(2456255-2456298)
chr3 (49-92)||(3754606-3754649)
chr3 (53-104)||(4142124-4142175)
chr3 (49-99)||(968677-968727)
chr3 (53-99)||(4157939-4157985)
chr3 (49-98)||(997582-997631)
chr3 (49-98)||(1013972-1014021)
chr3 (53-94)||(13498234-13498275)
chr3 (53-90)||(44001605-44001642)
chr3 (49-101)||(803211-803263)
chr3 (49-92)||(771501-771544)
[»] chr5 (5 HSPs)
chr5 (53-94)||(20293005-20293046)
chr5 (53-94)||(20305866-20305907)
chr5 (53-94)||(20310270-20310311)
chr5 (49-92)||(11081819-11081862)
chr5 (53-94)||(20301453-20301494)
[»] chr2 (4 HSPs)
chr2 (53-102)||(6538844-6538893)
chr2 (43-102)||(20538018-20538077)
chr2 (53-92)||(7160756-7160795)
chr2 (53-92)||(7168692-7168731)
[»] scaffold0044 (1 HSPs)
scaffold0044 (49-92)||(89149-89192)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 5e-44; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 5e-44
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 1442194 - 1442097
Alignment:
Q  8 gcttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagattcttggactaaattattcactgttcca 105  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1442194 gcttatgcatccttgctcaaaacggaactattttggatacatgggttatgaaggattatggaattaaagattcttggactaaattgttcactgttcca 1442097  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 1471008 - 1470925
Alignment:
Q  9 cttatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||||||||||| | |  | || |||||||||  ||||||||||| |||||||||| ||||||||||||| |||||||    
T  1471008 cttatgcatccttgctcataccaaatcttttttggatatttgggttatgaaagattatggaaataaagattcttggtctaaatt 1470925  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 176302 - 176396
Alignment:
Q  11 tatgcatccttgctcaaaacggagctattttggatacatgggttatgaaggattatggaattaaagattcttggactaaattattcactgttcca 105  Q
    ||||| |||||||||| | || | || |||||||||  |||  |||||| |||||||||| ||||||||||||||||||||| |||||| |||||    
T  176302 tatgcgtccttgctcacaccgaaacttttttggatatttggcgtatgaatgattatggaaataaagattcttggactaaattgttcactcttcca 176396  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 370830 - 370782
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaattattca 97  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  370830 tgggttatgaagaattatggaaataaagattcttggactaaattgttca 370782  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 7564796 - 7564740
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaattattcactgttcca 105  Q
    ||||||||||||||||||||||  || ||||||||||||||||| |||| |||||||    
T  7564796 tgggttatgaaggattatggaaacaaggattcttggactaaattgttcagtgttcca 7564740  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 1459597 - 1459543
Alignment:
Q  38 ttttggatacatgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||  ||||||||||| |||| ||||| |||||| ||||||||||||||    
T  1459597 ttttggatatttgggttatgaaagattttggaaataaagaatcttggactaaatt 1459543  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 1453895 - 1453842
Alignment:
Q  39 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    ||||||||  |||||||||||| ||||||||| |||||| ||||||| ||||||    
T  1453895 tttggatatctgggttatgaagtattatggaaataaagactcttggaataaatt 1453842  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 1465587 - 1465534
Alignment:
Q  39 tttggatacatgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    ||||||||  |||||||||||| ||||||||| |||||| ||||||| ||||||    
T  1465587 tttggatatctgggttatgaagtattatggaaataaagactcttggaataaatt 1465534  T

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Target: chr7 (Bit Score: 36; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 3927065 - 3927108
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||||||||||||||| |||| ||||||||||||||||    
T  3927065 tgggttatgaaggattatggaaataaaaattcttggactaaatt 3927108  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 55419777 - 55419831
Alignment:
Q  38 ttttggatacatgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||  ||| ||||||||| |||||||| |||||||||||||||||||||    
T  55419777 ttttggatatctggcttatgaaggtttatggaaataaagattcttggactaaatt 55419831  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 99
Target Start/End: Complemental strand, 20019817 - 20019767
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaattattcact 99  Q
    ||||| |||||||| ||||||||| |||| |||||||||||||| ||||||    
T  20019817 tgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcact 20019767  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 20016224 - 20016180
Alignment:
Q  55 atgaaggattatggaattaaagattcttggactaaattattcact 99  Q
    |||||||| ||||||||| |||| |||||||||||||| ||||||    
T  20016224 atgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 2442049 - 2442095
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaattattcact 99  Q
    |||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  2442049 ttatgaaggagtatggaaataaagattcttggactaaattgttcact 2442095  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 9608389 - 9608344
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaattat 94  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||    
T  9608389 tgggttatgaaggaatatggaaatatagattcttggactaaattat 9608344  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 2456255 - 2456298
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  2456255 tgggttatgaaggaatatggaaataaagactcttggactaaatt 2456298  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 3754606 - 3754649
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  3754606 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 3754649  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 4142175 - 4142124
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaattattcactgttcc 104  Q
    |||||||||| ||||||| |||||| |||||||||||||| |||||| ||||    
T  4142175 ttatgaaggaatatggaaataaagagtcttggactaaattgttcactattcc 4142124  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 968677 - 968727
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaattattcact 99  Q
    ||||||||||||||  |||||| |||||| || ||||||||||||||||||    
T  968677 tgggttatgaaggaacatggaaataaagagtcatggactaaattattcact 968727  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 4157985 - 4157939
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaattattcact 99  Q
    |||||||||| ||||||| |||||| |||||||||||||| ||||||    
T  4157985 ttatgaaggaatatggaaataaagagtcttggactaaattgttcact 4157939  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 997582 - 997631
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaattattcac 98  Q
    ||||| |||||||| ||||||| |||||| |||||||||||| |||||||    
T  997582 tgggtaatgaaggaatatggaaataaagagtcttggactaaactattcac 997631  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 1013972 - 1014021
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaattattcac 98  Q
    ||||| |||||||| ||||||| |||||| |||||||||||| |||||||    
T  1013972 tgggtaatgaaggaatatggaaataaagagtcttggactaaactattcac 1014021  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 13498234 - 13498275
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaattat 94  Q
    |||||||||| ||||||| |||||| ||||||||||||||||    
T  13498234 ttatgaaggaatatggaaataaagagtcttggactaaattat 13498275  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 44001605 - 44001642
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaa 90  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  44001605 ttatgaaggaatatggaattaaagagtcttggactaaa 44001642  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 803263 - 803211
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaattattcactgt 101  Q
    ||||||||||| || ||||||| |||||| ||||||||||| || ||||||||    
T  803263 tgggttatgaaagaatatggaaataaagagtcttggactaagttgttcactgt 803211  T

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Target: chr3; HSP #13
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 771544 - 771501
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||||||| ||||||| || ||| ||||||||||||||    
T  771544 tgggttatgaaggaatatggaaatacagactcttggactaaatt 771501  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 20293005 - 20293046
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaattat 94  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  20293005 ttatgaaggaatatggaattaaagagtcttggactaaattat 20293046  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 20305866 - 20305907
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaattat 94  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  20305866 ttatgaaggaatatggaattaaagagtcttggactaaattat 20305907  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 20310270 - 20310311
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaattat 94  Q
    |||||||||| |||||||||||||| ||||||||||||||||    
T  20310270 ttatgaaggaatatggaattaaagagtcttggactaaattat 20310311  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 11081819 - 11081862
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  11081819 tgggttatgaaggagtatggaaataaagagtcttggactaaatt 11081862  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 20301453 - 20301494
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaattat 94  Q
    |||||||||| |||| ||||||||| ||||||||||||||||    
T  20301453 ttatgaaggaatatgcaattaaagagtcttggactaaattat 20301494  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 6538844 - 6538893
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaattattcactgtt 102  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttcagtgtt 6538893  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 20538018 - 20538077
Alignment:
Q  43 gatacatgggttatgaaggattatggaattaaagattcttggactaaattattcactgtt 102  Q
    |||| |||||| ||||| || ||||||||| |||| |||||||||||||| |||||||||    
T  20538018 gatatatgggtcatgaatgaatatggaatttaagaatcttggactaaattgttcactgtt 20538077  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 7160795 - 7160756
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||| ||||||| ||| |||||||||||||||||    
T  7160795 ttatgaaggagtatggaaataatgattcttggactaaatt 7160756  T

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Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Complemental strand, 7168731 - 7168692
Alignment:
Q  53 ttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||| ||||||| ||| |||||||||||||||||    
T  7168731 ttatgaaggaatatggaaataacgattcttggactaaatt 7168692  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 89149 - 89192
Alignment:
Q  49 tgggttatgaaggattatggaattaaagattcttggactaaatt 92  Q
    |||||||||||||| ||||||| |||||| ||||||||||||||    
T  89149 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 89192  T

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