View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320A-Insertion-28 (Length: 75)
Name: NF1320A-Insertion-28
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1320A-Insertion-28 |
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[»] chr5 (1 HSPs) |
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[»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-29
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 36752640 - 36752708
Alignment:
Q |
7 |
aatacgggttcaaccatcgccaagtggtaaacgaatggcgtcctcaacgccaaatataaccgtcgagcc |
75 |
Q |
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T |
36752640 |
aatacgggttcaaccatcgccaagtggtaaaggaatggcgtcctcaacgccaaatataaccgtcgagcc |
36752708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 54294074 - 54294026
Alignment:
Q |
27 |
caagtggtaaacgaatggcgtcctcaacgccaaatataaccgtcgagcc |
75 |
Q |
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T |
54294074 |
caagtggtaaacgaatggcgacctcaaccccaaacagaaccgtcgagcc |
54294026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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