View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320A-Insertion-4 (Length: 613)
Name: NF1320A-Insertion-4
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320A-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 70 - 265
Target Start/End: Complemental strand, 7459293 - 7459098
Alignment:
| Q |
70 |
taatcgatcactgtgaactatctttgctttttatgaagtttatggtacaaaaggcgacaatagaatcaatttcaaaatagttaaaaatcaagaaagatga |
169 |
Q |
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| T |
7459293 |
taatcgatcactattaactatctttgctttttatgaagcttatggtacaaaaggcgacaatagaatcaatttcaaaatagttaaaaatcaagaaagatga |
7459194 |
T |
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| Q |
170 |
accaacatccatcaagaaatattccaaaaggattcgccacctaccttgtccattgcatcctcgagctctgccttctcggatggcaaagaggatttt |
265 |
Q |
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| T |
7459193 |
accaacatccatcaagaaatattccaaaaggattcgccacctaccttgtccattgcatcctcgagctctgccttctcggatggcaaagaggatttt |
7459098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 260 - 481
Target Start/End: Complemental strand, 7450543 - 7450322
Alignment:
| Q |
260 |
gattttcccatttcgaggccaaccttcaaggnnnnnnnttatcacgttcatattcaagaagtgtaactcgacctgagagagcctacctcacactcgatgt |
359 |
Q |
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| T |
7450543 |
gattttcccatttcgaggccaaccttcaaggaaaaaaattatcacgttgatattcaagaagtgtaactcaacctgagagagcctacctcacactcgatgt |
7450444 |
T |
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| Q |
360 |
cggaatcttctccacctccccgatgtctttccttacaacctcaacctcaacaaccttctaagaaatgtcattttcaatttcctygacccacatctctaag |
459 |
Q |
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| T |
7450443 |
cggaatctgctccacctccccaatgtctttccttacaacctcagcctcaacaatgttctaagaaatgtcattttcaatttccttgacccacatctctaag |
7450344 |
T |
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| Q |
460 |
gatgccactttggcagaaagag |
481 |
Q |
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||| |||||||||||||||||| |
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| T |
7450343 |
gataccactttggcagaaagag |
7450322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 260 - 481
Target Start/End: Complemental strand, 7458685 - 7458464
Alignment:
| Q |
260 |
gattttcccatttcgaggccaaccttcaaggnnnnnnnttatcacgttcatattcaagaagtgtaactcgacctgagagagcctacctcacactcgatgt |
359 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7458685 |
gattttcccatttcgaggccaaccttcaaggaaaaaaattatcacgttgatattcaagaagtgtaactcaacctgagagagcctacctcacactcgatgt |
7458586 |
T |
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| Q |
360 |
cggaatcttctccacctccccgatgtctttccttacaacctcaacctcaacaaccttctaagaaatgtcattttcaatttcctygacccacatctctaag |
459 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7458585 |
cggaatctgctccacctccccaatgtctttccttacaacctcagcctcaacaatgttctaagaaatgtcattttcaatttccttgacccacatctctaag |
7458486 |
T |
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| Q |
460 |
gatgccactttggcagaaagag |
481 |
Q |
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||| |||||||||||||||||| |
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| T |
7458485 |
gataccactttggcagaaagag |
7458464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 7459338 - 7459286
Alignment:
| Q |
4 |
aacaatcatctcawacattccatatcaagtgaaatatcttaaacttaatcgat |
56 |
Q |
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| T |
7459338 |
aacaatcatctcaaacattccatatcaagtgaaatatcttaaacttaatcgat |
7459286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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