View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320A-Insertion-5 (Length: 660)

Name: NF1320A-Insertion-5
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320A-Insertion-5
NF1320A-Insertion-5
[»] chr4 (2 HSPs)
chr4 (195-660)||(55022801-55023262)
chr4 (8-124)||(55022615-55022731)
[»] chr2 (1 HSPs)
chr2 (49-116)||(7934550-7934617)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 195 - 660
Target Start/End: Original strand, 55022801 - 55023262
Alignment:
Q  195 cccagcgaacttgctaaaggtttgggtgacaagggtctcattgatttctccctagtcgagcatgttatcctcaaaagtatgtatttcctttccatcacaa 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55022801 cccagcgaacttgctaaaggtttgggtgacaagggtctcattgatttctccctagtcgagcatgttatcctcaaaagtatgtatttcctttccatcacaa 55022900  T
Q  295 ctcttttaccgtttctttaactttatgaattgttctctaaggtgttgaatttgttggatgatatatatcatatgattcttttccgctcttaatacaacac 394  Q
    ||||||||||||||||||||||||||         || ||||||||||||||||||||             ||||||||||||||||||||||||| |||    
T  55022901 ctcttttaccgtttctttaactttat---------tcgaaggtgttgaatttgttggac------------atgattcttttccgctcttaataca-cac 55022978  T
Q  395 ttcctggattttgaaagaccttaatcatctcttgctgttcatttgtttccttaatt----cactcttaaattaaagagtaaatagtcattt--------- 481  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||||||| |||||||||             
T  55022979 tttctggattttgaaagaccttaatcctctcttgctgttcatttgtttccttaattaattcactcttaaattaaagagtaagtagtcattttgaattttg 55023078  T
Q  482 -----gtgaatagttgttattatagtctatgaatgtatcaaaactacaacatcgtacatgaatgtgtgttttgttggttagtttggtctatatgagctta 576  Q
         ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55023079 aatttgtgaatagttgttgttatagtctatgaatgtatcaaaactacaacgtcgtacatgaatgtgtgttttgttggttagtttggtctatatgagctta 55023178  T
Q  577 ctaacaaaagacacattcaaccatgtttttgcattttcgatacatttaggggagtaacaccacttcacacaattagggaccaac 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55023179 ctaacaaaagacacattcaaccatgtttttgcattttcgatacatttaggggagtaacaccacttcacacaattagggaccaac 55023262  T

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Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 55022615 - 55022731
Alignment:
Q  8 tgatgaccaagatacaagacgcaagaaagagtgagatggagtggtgtatgtcaattccaaaggtagaattgcatgctcacctcaatggatccatcagaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55022615 tgatgaccaagatacaagacgcaagaaagagtgagatggagtggtgtatgtcaattccaaaggtagaattgcatgctcacctcaatggatccatcagaga 55022714  T
Q  108 ctccacacttctgtatg 124  Q
    |||||||||||||||||    
T  55022715 ctccacacttctgtatg 55022731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 7934550 - 7934617
Alignment:
Q  49 tggtgtatgtcaattccaaaggtagaattgcatgctcacctcaatggatccatcagagactccacact 116  Q
    |||||| | ||||| |||||||| ||| ||||||||||||||||||| |||||||||| ||| |||||    
T  7934550 tggtgtctctcaatgccaaaggttgaactgcatgctcacctcaatggttccatcagagtctctacact 7934617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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