View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320A-Insertion-6 (Length: 330)

Name: NF1320A-Insertion-6
Description: NF1320A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320A-Insertion-6
NF1320A-Insertion-6
[»] chr5 (6 HSPs)
chr5 (8-330)||(29200795-29201117)
chr5 (133-230)||(29200759-29200856)
chr5 (58-98)||(29200707-29200747)
chr5 (11-45)||(17535647-17535681)
chr5 (14-42)||(28322270-28322298)
chr5 (15-51)||(39828486-39828522)
[»] chr4 (11 HSPs)
chr4 (8-330)||(12650775-12651097)
chr4 (133-235)||(12651031-12651133)
chr4 (14-43)||(30075646-30075675)
chr4 (12-53)||(31901277-31901318)
chr4 (20-48)||(683075-683103)
chr4 (20-48)||(9988707-9988735)
chr4 (62-98)||(12651145-12651181)
chr4 (12-48)||(13307900-13307936)
chr4 (20-48)||(19262932-19262960)
chr4 (176-204)||(30075647-30075675)
chr4 (14-42)||(50699199-50699227)
[»] chr7 (7 HSPs)
chr7 (13-48)||(10893870-10893905)
chr7 (12-54)||(6518676-6518718)
chr7 (176-205)||(10893872-10893901)
chr7 (13-53)||(1745183-1745223)
chr7 (20-48)||(6824240-6824268)
chr7 (16-48)||(10893351-10893383)
chr7 (11-43)||(22636469-22636501)
[»] chr6 (2 HSPs)
chr6 (10-51)||(10033249-10033290)
chr6 (13-42)||(24821702-24821731)
[»] chr1 (4 HSPs)
chr1 (12-53)||(50195465-50195506)
chr1 (11-53)||(26777376-26777418)
chr1 (12-48)||(31667448-31667484)
chr1 (20-48)||(32637858-32637886)
[»] chr8 (4 HSPs)
chr8 (12-53)||(10002163-10002204)
chr8 (11-48)||(31681829-31681866)
chr8 (20-48)||(32691766-32691794)
chr8 (12-48)||(33684884-33684920)
[»] chr3 (3 HSPs)
chr3 (15-48)||(47678864-47678897)
chr3 (20-48)||(1502597-1502625)
chr3 (11-47)||(1916778-1916814)
[»] chr2 (3 HSPs)
chr2 (11-48)||(21371795-21371832)
chr2 (2-46)||(41514314-41514358)
chr2 (14-54)||(42665625-42665665)
[»] scaffold0206 (1 HSPs)
scaffold0206 (14-54)||(9459-9499)


Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 29200795 - 29201117
Alignment:
Q  8 aaaacgacaccaacacatgtgattacattcaattatgtcatattttctttttgttattgttgcctacatgttgtgtctaattgttattgttgtcgacgtg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29200795 aaaacgacaccaacacatgtgattacattcaattatgtcatattttctttttgttattgttgcctacatgttgtgtctaattgttattgttgtcaacgtg 29200894  T
Q  108 tcgtgtttgctggtcaagacgtgtcgtgtttggtgttcaagaagtgttggtgtctgataccaaaacggcaccaacacatgtgattacattcaattatggc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29200895 tcgtgtttgctggtcaagacgtgtcgtgtttggtgttcaagaagtgttggtgtctgataccaaaacggcaccaacacatgtgattacattcaattatggc 29200994  T
Q  208 atattttctattttttattgttgtcgacgtgtctggcgtccgtgtacccaaatgcttcaaaaatctttattcaatttcagggagtatgtgtgtgtttagt 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29200995 atattttctatttgttattgttgtcgacgtgtctggcgtccgtgtacacaaatgcttcaaaaatctttattcaatttcagtgagtatgtgtgtgtttagt 29201094  T
Q  308 tgagtaatattttgtgtgtgtgt 330  Q
    | |||||||||||||||||||||    
T  29201095 ttagtaatattttgtgtgtgtgt 29201117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 133 - 230
Target Start/End: Original strand, 29200759 - 29200856
Alignment:
Q  133 gtgtttggtgttcaagaagtgttggtgtctgataccaaaacggcaccaacacatgtgattacattcaattatggcatattttctattttttattgttg 230  Q
    ||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  29200759 gtgtttggtgttcgagaagtgtcggtgtctgataccaaaacgacaccaacacatgtgattacattcaattatgtcatattttctttttgttattgttg 29200856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 29200707 - 29200747
Alignment:
Q  58 ttgttattgttgcctacatgttgtgtctaattgttattgtt 98  Q
    |||||||||||||| |||||| |||||||||||||||||||    
T  29200707 ttgttattgttgccgacatgtcgtgtctaattgttattgtt 29200747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 17535681 - 17535647
Alignment:
Q  11 acgacaccaacacatgtgattacattcaattatgt 45  Q
    |||||||||||||||||||||| ||||||||||||    
T  17535681 acgacaccaacacatgtgattatattcaattatgt 17535647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 28322298 - 28322270
Alignment:
Q  14 acaccaacacatgtgattacattcaatta 42  Q
    |||||||||||||||||||||||||||||    
T  28322298 acaccaacacatgtgattacattcaatta 28322270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 39828522 - 39828486
Alignment:
Q  15 caccaacacatgtgattacattcaattatgtcatatt 51  Q
    |||||||||||||| |||||||||||||| |||||||    
T  39828522 caccaacacatgtggttacattcaattatttcatatt 39828486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 330
Target Start/End: Complemental strand, 12651097 - 12650775
Alignment:
Q  8 aaaacgacaccaacacatgtgattacattcaattatgtcatattttctttttgttattgttgcctacatgttgtgtctaattgttattgttgtcgacgtg 107  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12651097 aaaacgacaccaacacatgtgattacattcaattatgacatattttctttttgttattgttgccgacatgttgtgtctaattgttattgttgtcgacgtg 12650998  T
Q  108 tcgtgtttgctggtcaagacgtgtcgtgtttggtgttcaagaagtgttggtgtctgataccaaaacggcaccaacacatgtgattacattcaattatggc 207  Q
    || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12650997 tcatgtttggtgttcaagacgtgtcgtgtttggtgttcaagaagtgttggtgtctgataccaaaatggcaccaacacatgtgattacattcaattatggc 12650898  T
Q  208 atattttctattttttattgttgtcgacgtgtctggcgtccgtgtacccaaatgcttcaaaaatctttattcaatttcagggagtatgtgtgtgtttagt 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12650897 atattttctatttgttattgttgtcgacgtgtctggcgtccgtgtacacaaatgcttcaaaaatctttattcaatttcagtgagtatgtgtgtgtttagt 12650798  T
Q  308 tgagtaatattttgtgtgtgtgt 330  Q
    | |||||||||||||||||||||    
T  12650797 ttagtaatattttgtgtgtgtgt 12650775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 12651133 - 12651031
Alignment:
Q  133 gtgtttggtgttcaagaagtgttggtgtctgataccaaaacggcaccaacacatgtgattacattcaattatggcatattttctattttttattgttgtc 232  Q
    ||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |    
T  12651133 gtgtttggtgttcgagaagtgtcggtgtctgatatcaaaacgacaccaacacatgtgattacattcaattatgacatattttctttttgttattgttgcc 12651034  T
Q  233 gac 235  Q
    |||    
T  12651033 gac 12651031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 30075646 - 30075675
Alignment:
Q  14 acaccaacacatgtgattacattcaattat 43  Q
    ||||||||||||||||||||||||||||||    
T  30075646 acaccaacacatgtgattacattcaattat 30075675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 31901277 - 31901318
Alignment:
Q  12 cgacaccaacacatgtgattacattcaattatgtcatatttt 53  Q
    |||||||| |||||||||||||||||||||||| ||| ||||    
T  31901277 cgacaccagcacatgtgattacattcaattatgccatttttt 31901318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 683103 - 683075
Alignment:
Q  20 acacatgtgattacattcaattatgtcat 48  Q
    |||||||||||||||||||||||||||||    
T  683103 acacatgtgattacattcaattatgtcat 683075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 9988707 - 9988735
Alignment:
Q  20 acacatgtgattacattcaattatgtcat 48  Q
    |||||||||||||||||||||||||||||    
T  9988707 acacatgtgattacattcaattatgtcat 9988735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 12651181 - 12651145
Alignment:
Q  62 tattgttgcctacatgttgtgtctaattgttattgtt 98  Q
    |||||||||| |||||| |||||||||||||||||||    
T  12651181 tattgttgccgacatgtcgtgtctaattgttattgtt 12651145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 13307936 - 13307900
Alignment:
Q  12 cgacaccaacacatgtgattacattcaattatgtcat 48  Q
    |||||||||||| |||||||||||| |||||||||||    
T  13307936 cgacaccaacacttgtgattacattgaattatgtcat 13307900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 19262932 - 19262960
Alignment:
Q  20 acacatgtgattacattcaattatgtcat 48  Q
    |||||||||||||||||||||||||||||    
T  19262932 acacatgtgattacattcaattatgtcat 19262960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 30075647 - 30075675
Alignment:
Q  176 caccaacacatgtgattacattcaattat 204  Q
    |||||||||||||||||||||||||||||    
T  30075647 caccaacacatgtgattacattcaattat 30075675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 50699227 - 50699199
Alignment:
Q  14 acaccaacacatgtgattacattcaatta 42  Q
    |||||||||||||||||||||||||||||    
T  50699227 acaccaacacatgtgattacattcaatta 50699199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 10893870 - 10893905
Alignment:
Q  13 gacaccaacacatgtgattacattcaattatgtcat 48  Q
    ||||||||||||||||||||||||||||||||||||    
T  10893870 gacaccaacacatgtgattacattcaattatgtcat 10893905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 6518718 - 6518676
Alignment:
Q  12 cgacaccaacacatgtgattacattcaattatgtcatattttc 54  Q
    |||||| |||||||||||| ||||| |||||||||||||||||    
T  6518718 cgacacaaacacatgtgatcacattgaattatgtcatattttc 6518676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 10893872 - 10893901
Alignment:
Q  176 caccaacacatgtgattacattcaattatg 205  Q
    ||||||||||||||||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatg 10893901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 1745223 - 1745183
Alignment:
Q  13 gacaccaacacatgtgattacattcaattatgtcatatttt 53  Q
    ||||||||||||||||||| |||||||||||| ||| ||||    
T  1745223 gacaccaacacatgtgattccattcaattatgccatttttt 1745183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 6824268 - 6824240
Alignment:
Q  20 acacatgtgattacattcaattatgtcat 48  Q
    |||||||||||||||||||||||||||||    
T  6824268 acacatgtgattacattcaattatgtcat 6824240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 10893351 - 10893383
Alignment:
Q  16 accaacacatgtgattacattcaattatgtcat 48  Q
    ||||||||||| |||||||||||||||||||||    
T  10893351 accaacacatgcgattacattcaattatgtcat 10893383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 22636501 - 22636469
Alignment:
Q  11 acgacaccaacacatgtgattacattcaattat 43  Q
    ||||||||||||||| |||||||||||||||||    
T  22636501 acgacaccaacacatttgattacattcaattat 22636469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 10033290 - 10033249
Alignment:
Q  10 aacgacaccaacacatgtgattacattcaattatgtcatatt 51  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  10033290 aacgacaccaacacatgtgattactttcaattatttcatatt 10033249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 42
Target Start/End: Complemental strand, 24821731 - 24821702
Alignment:
Q  13 gacaccaacacatgtgattacattcaatta 42  Q
    ||||||||||||||||||||||||||||||    
T  24821731 gacaccaacacatgtgattacattcaatta 24821702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 50195465 - 50195506
Alignment:
Q  12 cgacaccaacacatgtgattacattcaattatgtcatatttt 53  Q
    ||||||| ||||||||||||||||||||||||||||| ||||    
T  50195465 cgacaccgacacatgtgattacattcaattatgtcatttttt 50195506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 26777376 - 26777418
Alignment:
Q  11 acgacaccaacacatgtgattacattcaattatgtcatatttt 53  Q
    |||||||| ||||||||||||||||||||||| ||||| ||||    
T  26777376 acgacacccacacatgtgattacattcaattaagtcatttttt 26777418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 31667484 - 31667448
Alignment:
Q  12 cgacaccaacacatgtgattacattcaattatgtcat 48  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  31667484 cgacaccgacacatgtgattacatttaattatgtcat 31667448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 32637886 - 32637858
Alignment:
Q  20 acacatgtgattacattcaattatgtcat 48  Q
    |||||||||||||||||||||||||||||    
T  32637886 acacatgtgattacattcaattatgtcat 32637858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 10002163 - 10002204
Alignment:
Q  12 cgacaccaacacatgtgattacattcaattatgtcatatttt 53  Q
    ||||||| ||||||||||||||||| ||||||||||| ||||    
T  10002163 cgacaccgacacatgtgattacattaaattatgtcatttttt 10002204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 31681829 - 31681866
Alignment:
Q  11 acgacaccaacacatgtgattacattcaattatgtcat 48  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  31681829 acgacaccgacacatgtgatttcattcaattatgtcat 31681866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 32691794 - 32691766
Alignment:
Q  20 acacatgtgattacattcaattatgtcat 48  Q
    |||||||||||||||||||||||||||||    
T  32691794 acacatgtgattacattcaattatgtcat 32691766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 33684884 - 33684920
Alignment:
Q  12 cgacaccaacacatgtgattacattcaattatgtcat 48  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  33684884 cgacactaacacatgtgattacattcaattttgtcat 33684920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 47678897 - 47678864
Alignment:
Q  15 caccaacacatgtgattacattcaattatgtcat 48  Q
    ||||||||||| ||||||||||||||||||||||    
T  47678897 caccaacacatatgattacattcaattatgtcat 47678864  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 48
Target Start/End: Complemental strand, 1502625 - 1502597
Alignment:
Q  20 acacatgtgattacattcaattatgtcat 48  Q
    |||||||||||||||||||||||||||||    
T  1502625 acacatgtgattacattcaattatgtcat 1502597  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 1916814 - 1916778
Alignment:
Q  11 acgacaccaacacatgtgattacattcaattatgtca 47  Q
    |||||||||||||||||||||||||| |||| |||||    
T  1916814 acgacaccaacacatgtgattacattaaattttgtca 1916778  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 21371832 - 21371795
Alignment:
Q  11 acgacaccaacacatgtgattacattcaattatgtcat 48  Q
    ||||||| |||||||||||||||||| |||||||||||    
T  21371832 acgacacaaacacatgtgattacatttaattatgtcat 21371795  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 41514314 - 41514358
Alignment:
Q  2 ccaacaaaaacgacaccaacacatgtgattacattcaattatgtc 46  Q
    |||||| ||| ||||| |||||||||||||||||||||| |||||    
T  41514314 ccaacacaaatgacactaacacatgtgattacattcaatcatgtc 41514358  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 42665665 - 42665625
Alignment:
Q  14 acaccaacacatgtgattacattcaattatgtcatattttc 54  Q
    ||||||||||||||||||||||| ||| ||||||| |||||    
T  42665665 acaccaacacatgtgattacattgaatcatgtcatcttttc 42665625  T

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Target: scaffold0206 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 9459 - 9499
Alignment:
Q  14 acaccaacacatgtgattacattcaattatgtcatattttc 54  Q
    ||||||||||||| |||| |||||||||||||||| |||||    
T  9459 acaccaacacatgcgatttcattcaattatgtcattttttc 9499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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