View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-1 (Length: 418)
Name: NF1320F-Insertion-1
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 7 - 418
Target Start/End: Original strand, 40866745 - 40867156
Alignment:
| Q |
7 |
aggactttcataccaattatcatagccttgagtgcacccaataaaacccatgttccctttgtatgattcagtggatgcacccctatggtgcaccctttga |
106 |
Q |
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| T |
40866745 |
aggactttcataccaattatcatagccttgagtgcacccaataaaacccatgttccctttgtatgattcagtggatgcacccctatggtgcaccctttga |
40866844 |
T |
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| Q |
107 |
ggaaaatttgaaccataaccaaccaaatagctcatacccattggattagaacccaagatgtaatcaacttgtgattttgcaaaggctaagagttcattgg |
206 |
Q |
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| T |
40866845 |
ggaaaatttgaaccataaccaaccagatagctcatacccattggattagaacccaagatgtaatcaacttgtgattttgcaaaggctaagagttcattgg |
40866944 |
T |
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| Q |
207 |
gacccacctcacctttttggcaatgcaatttttgatttgtagctaagaggtgatcagaataaatggcgagaagaaatgctgcatttgcaacatattgcat |
306 |
Q |
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| T |
40866945 |
gacccacctcacctttttggcaatgcaatttttgatttgtagctaagaggtgatcagaataaatggccagaagaaatgctgcatttgcaacatattgcat |
40867044 |
T |
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| Q |
307 |
attgttccattggcggatgtatagtaaacctcctggggtgcgatccacgttatctttacttgcattgttgagattaagacatgcacaaaaataatgttct |
406 |
Q |
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| T |
40867045 |
attgttccattggcggatgtatagtaaacctcctggggtgcgatccacgttatctttacttgcattgttgagattaagacatgcacaaaaataatgttct |
40867144 |
T |
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| Q |
407 |
gcttttgaacga |
418 |
Q |
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| T |
40867145 |
gcttttgaacga |
40867156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 37043835 - 37043765
Alignment:
| Q |
119 |
ccataaccaaccaaatagctcatacccattggattagaacccaagatgtaatcaacttgtgattttgcaaa |
189 |
Q |
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| T |
37043835 |
ccataacccactaagtagctcatgttcatagggttagagcccaaaatgtaatcaacttgtgattttgcaaa |
37043765 |
T |
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