View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-11 (Length: 764)
Name: NF1320F-Insertion-11
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-11 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 581; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 52 - 753
Target Start/End: Complemental strand, 28638210 - 28637520
Alignment:
| Q |
52 |
aattagatttgcagcatactctttcaataagtgagtagtaacgtgcataagtgttgtatccaccaataattaaatttaaagtgcatatcttaatcttagc |
151 |
Q |
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| T |
28638210 |
aattagatttgcagcatactctttcaataagtgagtagtaacgtggataagtgttgtattcaccaataattaaatttaaagtgcatatcttaatcttagc |
28638111 |
T |
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| Q |
152 |
tcactaaaatttagagttggataactttataattgtgcacttttggaggcaaaattcactttatgttaatctttttctattacttcccacttatagtata |
251 |
Q |
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| T |
28638110 |
tcactaaaatttagagttggataactttataattgtgcacttttggaggcaaaattcactttatgttaatctttttctattacttcccacttatagtata |
28638011 |
T |
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| Q |
252 |
gctttatggcgaagataatttaattgcaaattatctcttcatatctatgagtgctacctaattttgtcctttacaacagacagaaaattgtgtatcagat |
351 |
Q |
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| T |
28638010 |
gctttatggtgaagataatttaattgcaaattatctcttcatatctatgagtgctacctaattttgtcctttacaacagacagaaaattgtgtatcagat |
28637911 |
T |
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| Q |
352 |
tttgtgctgctttacacatttcaatttcatcacatggtagtagttaatgtttcattaataaactactttttgtctccactcaggtgtgaagccatgtcca |
451 |
Q |
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| T |
28637910 |
ttattgctgctttacacat------ttcatcacatggtagtagttaatgtttcattaataaactactttttgtctccactcaggtgtgaagccatgtcca |
28637817 |
T |
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| Q |
452 |
cttatcctcgaacctatgactttatacatgctgattctctctttagcctctatgaggacaggtaaattgtgaaattggttttgccaaattgagaaataat |
551 |
Q |
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| T |
28637816 |
cttatcctagaacctatgactttatacatgctgattctctttttaccctctatgaggacaggtaaattgtgaaattggttttgcctaattgaga---aat |
28637720 |
T |
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| Q |
552 |
aactatttaccagtcatataataactttgtaataatatatgaaattattcaatgtgtgacagatgtaatatagaggacattcttcttgagatggatagga |
651 |
Q |
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| T |
28637719 |
aactattta--aat--tataataactttgtaataatatatgaaattattcaatgtgtgacagatgtaatatagaggacattcttgttgagatggatagga |
28637624 |
T |
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| Q |
652 |
ttttaaggccacaagggagtgtgatattgcgtgatgatgtggatgtgttgttgaa-gtaaaaagatttgaagatgcaatgcaatgggatgctag-attgc |
749 |
Q |
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| T |
28637623 |
ttttaaggccacaagggagtgtgatattgcgtgatgatgtggatgtgttgttgaaggtaaaaagatttgcagatgcaatgcaatgggatgctagaattgc |
28637524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 432 - 515
Target Start/End: Complemental strand, 64147 - 64064
Alignment:
| Q |
432 |
caggtgtgaagccatgtccacttatcctcgaacctatgactttatacatgctgattctctctttagcctctatgaggacaggta |
515 |
Q |
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| T |
64147 |
caggtgtgaagctatgtctacttatcctagaacttatgacctaattcatgctgattctgtgtttagcctttataatgacaggta |
64064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 488
Target Start/End: Complemental strand, 12400269 - 12400211
Alignment:
| Q |
430 |
ctcaggtgtgaagccatgtccacttatcctcgaacctatgactttatacatgctgattc |
488 |
Q |
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| T |
12400269 |
ctcaggtgtgaagccatgtctacttacccacgaacttatgacttcatacatggtgattc |
12400211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 433 - 488
Target Start/End: Complemental strand, 45784819 - 45784764
Alignment:
| Q |
433 |
aggtgtgaagccatgtccacttatcctcgaacctatgactttatacatgctgattc |
488 |
Q |
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| T |
45784819 |
aggtgtgaagcaatgtccacttatccaagaacctatgatttaattcatgctgattc |
45784764 |
T |
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