View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-13 (Length: 543)
Name: NF1320F-Insertion-13
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-13 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 12 - 543
Target Start/End: Complemental strand, 49206820 - 49206286
Alignment:
| Q |
12 |
cctccggcttgggtgggatctttacctgacaaaaactcttaatttggagatgcaagtattaggtttacaatagcagtaccttttattgtgtgatatgtgt |
111 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206820 |
cctccggcttggatgggatctttacctgacaaaaactcttaatttggagatgcaagtattaggtttacaatagcagtaccttttattgtgtgatatgtgt |
49206721 |
T |
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| Q |
112 |
tttattcaccagtcttttattagttttaggttcaaactacta---tgtcatatgatgatttagtttacatttttacatgcttggtattttttgaatggaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49206720 |
tttattcaccagtcttttattagttttaggttcaaactactactatgtcatatgatgatttagtttacatttttacatgcttggtattttttgaatggaa |
49206621 |
T |
|
| Q |
209 |
ttttggcgtttaaaacaaaacttctgacaaggacaatcatcacatcgtggttattctttttgtcggtatgcgtaagtcatgaaataacgagttctttacc |
308 |
Q |
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| T |
49206620 |
ttttggcgtttaaaacaaaacttctgacagggacaatcatcacatcgtggttatttttgttgtcggtatgcgtaagtcatgaaataacgagttctttacc |
49206521 |
T |
|
| Q |
309 |
aatttacagggcctcaaaattttggttatatggtagcttggtagctccaatcacttgttaaaatcatgatagttctaacctaacccacatccaccaccaa |
408 |
Q |
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| T |
49206520 |
aatttacagggcctcaaaattttggttatatggtagcttggtagctccaatcacttgttaaaatcatgatagttctaacctaacccacatccaccaccaa |
49206421 |
T |
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| Q |
409 |
caacaaaataaattgaaatcaaatcatgcttttcgcttctactacgtcctttgacaccatccatcccttcaacttttttcctctcctggacatcatccgt |
508 |
Q |
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| T |
49206420 |
caacaaaataaattgaaatcaaatcatgcttttcgcttctactacgtcctttgacaccatccatcccttcaacttttttcctctcctggacaccatccct |
49206321 |
T |
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| Q |
509 |
ctcagcgctattgccgtgccgctgctcatccatca |
543 |
Q |
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| T |
49206320 |
ctcaccgctattgccgtgccgctgctcaaccatca |
49206286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 61 - 230
Target Start/End: Complemental strand, 49201810 - 49201638
Alignment:
| Q |
61 |
atgcaagtattaggtttacaatagcagtaccttttattgtgtgat--atgtgttttattcaccagtcttttattagttttaggttcaaactactatgtca |
158 |
Q |
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| T |
49201810 |
atgcaagtattaggtttatatcagtagtaccttttattgtgtgattgatgtgtttgattcaccagtcttttattagttttaggttcaaactattatgtta |
49201711 |
T |
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| Q |
159 |
tatgatgatttagtttacatttttacatgcttggtatt-ttttgaatggaattttggcgtttaaaacaaaact |
230 |
Q |
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| T |
49201710 |
tatgacaatttaatttacatttttacatgcatggtatttttttgaatgcacttttggtgtttaaaacaaaact |
49201638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 49211410 - 49211313
Alignment:
| Q |
8 |
gttgcctccggcttgggtgggatctttacctgacaaaaactcttaa-------tttggagatgcaagtattaggtttacaatagcagtaccttttatt |
98 |
Q |
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||||||||| |||||| ||||||| ||| ||||||||| ||||||| || |||||||||||||||||||||||| ||| |||| |||||||| |
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| T |
49211410 |
gttgcctcctgcttggatgggatccttatctgacaaaagctcttaagtcttaattaggagatgcaagtattaggtttacagtagtagtatcttttatt |
49211313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 49190417 - 49190372
Alignment:
| Q |
167 |
tttagtttacatttttacatgcttggtattttttgaatggaatttt |
212 |
Q |
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| T |
49190417 |
tttaatttacacttttacatgcttggtattttatgaatggaatttt |
49190372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 124 - 253
Target Start/End: Complemental strand, 37029918 - 37029786
Alignment:
| Q |
124 |
tcttttattagttttaggttcaaactactatgtcatatgatgatttagtttacatttttacatgcttg---gtattttttgaatggaattttggcgttta |
220 |
Q |
| |
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||||||||||||||| |||| ||||| ||| ||||||||||||||| |||||||||||| |||||| | |||||| ||||||||||||||||| | |
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| T |
37029918 |
tcttttattagttttgggtttaaactcttatatcatatgatgatttaatttacatttttagttgcttgttttttttttttaaatggaattttggcgttca |
37029819 |
T |
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| Q |
221 |
aaacaaaacttctgacaaggacaatcatcacat |
253 |
Q |
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| T |
37029818 |
aaacaaaactcctaacaaagactaacatcacat |
37029786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 32593693 - 32593784
Alignment:
| Q |
8 |
gttgcctccggcttgggtgggatctttacctgacaaaaactcttaatttggag-atgcaagtattaggtttacaatagcagtaccttttatt |
98 |
Q |
| |
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||||||||| |||||| ||||| | ||| | ||||||| ||||||||| |||| |||||||||||||||||| | ||| | ||||||||||| |
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| T |
32593693 |
gttgcctcctgcttggatgggaaccttatccgacaaaagctcttaattaggaggatgcaagtattaggtttatagtagtaataccttttatt |
32593784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 32594037 - 32594083
Alignment:
| Q |
166 |
atttagtttacatttttacatgcttggtattttttgaatggaatttt |
212 |
Q |
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| T |
32594037 |
atttaatttacaattttacatgcttggtattttatgaatggaatttt |
32594083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 26755785 - 26755693
Alignment:
| Q |
166 |
atttagtttacatttttacatgcttggtattttttgaatggaattttggcgtttaaaacaaaacttctgacaaggacaatcatcacatcgtggt |
259 |
Q |
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||||| |||||||||||| |||||||||||||| |||| |||||||| ||| | ||||||||||| || | |||||| | |||||||||||||| |
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| T |
26755785 |
atttaatttacatttttatatgcttggtattttatgaacggaatttttgcgataaaaacaaaactcct-agaaggactaacatcacatcgtggt |
26755693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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