View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320F-Insertion-15 (Length: 636)

Name: NF1320F-Insertion-15
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320F-Insertion-15
NF1320F-Insertion-15
[»] chr8 (7 HSPs)
chr8 (257-630)||(8578385-8578758)
chr8 (9-200)||(8578142-8578332)
chr8 (401-503)||(8603608-8603710)
chr8 (401-439)||(35869744-35869782)
chr8 (391-439)||(12972753-12972801)
chr8 (444-490)||(6509328-6509374)
chr8 (391-436)||(34563147-34563192)
[»] chr7 (7 HSPs)
chr7 (430-504)||(514752-514826)
chr7 (447-515)||(39505958-39506026)
chr7 (403-436)||(26030895-26030928)
chr7 (391-439)||(7100742-7100790)
chr7 (399-439)||(18749935-18749975)
chr7 (393-425)||(30133950-30133982)
chr7 (397-429)||(31751870-31751902)
[»] chr4 (6 HSPs)
chr4 (401-439)||(24443945-24443983)
chr4 (390-437)||(4471067-4471114)
chr4 (445-499)||(3175951-3176005)
chr4 (446-491)||(29263371-29263416)
chr4 (391-439)||(485978-486026)
chr4 (391-439)||(46053597-46053645)
[»] scaffold0085 (1 HSPs)
scaffold0085 (391-431)||(26174-26214)
[»] chr3 (6 HSPs)
chr3 (452-503)||(44284092-44284143)
chr3 (391-439)||(29094278-29094326)
chr3 (401-439)||(28881833-28881871)
chr3 (454-503)||(53848075-53848124)
chr3 (446-490)||(24158528-24158572)
chr3 (450-518)||(30923895-30923963)
[»] chr6 (5 HSPs)
chr6 (444-489)||(33067157-33067202)
chr6 (391-430)||(4247218-4247257)
chr6 (391-437)||(21919971-21920017)
chr6 (402-439)||(31668810-31668847)
chr6 (391-439)||(31337920-31337968)
[»] chr5 (13 HSPs)
chr5 (392-428)||(8472007-8472043)
chr5 (391-439)||(26516195-26516243)
chr5 (393-437)||(31687924-31687968)
chr5 (447-491)||(40205098-40205142)
chr5 (389-439)||(6738532-6738582)
chr5 (445-491)||(28409389-28409435)
chr5 (391-436)||(912995-913040)
chr5 (445-518)||(4855698-4855771)
chr5 (394-439)||(20982260-20982305)
chr5 (390-439)||(38819700-38819749)
chr5 (390-430)||(6725133-6725173)
chr5 (391-439)||(14716595-14716643)
chr5 (391-439)||(23999053-23999101)
[»] chr2 (11 HSPs)
chr2 (452-491)||(43591534-43591573)
chr2 (444-490)||(9878707-9878753)
chr2 (389-427)||(29419801-29419839)
chr2 (393-438)||(19333411-19333456)
chr2 (389-430)||(42817510-42817551)
chr2 (391-439)||(2400053-2400101)
chr2 (405-449)||(9404511-9404555)
chr2 (403-439)||(34339032-34339068)
chr2 (411-447)||(37053511-37053547)
chr2 (444-516)||(39983341-39983413)
chr2 (402-430)||(43965264-43965292)
[»] scaffold0020 (1 HSPs)
scaffold0020 (445-518)||(159970-160043)
[»] chr1 (1 HSPs)
chr1 (454-491)||(4699639-4699676)
[»] scaffold0024 (1 HSPs)
scaffold0024 (391-439)||(27473-27521)


Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 257 - 630
Target Start/End: Original strand, 8578385 - 8578758
Alignment:
Q  257 atccttttgaatttctgaacattcttttcagaaaatctaaggtatcgctgcctcgttcttcttcattattgtttttgcttccatgatagtgtgttttgtt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578385 atccttttgaatttctgaacattcttttcagaaaatctaaggtatcgctgcctcgttcttcttcattattgtttttgcttccatgatagtgtgttttgtt 8578484  T
Q  357 tgttcttctgtgtttagaacctgtttcaaaatgtttaattaaatgcttatagcataagcacttatcatataagttcttatgtacagactataaggtgttt 456  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  8578485 tgttcttctgtgtttaaaacctgtttcaaaatgttcaattaaatgcttatagcataagcacttatcatataagtgcttatgtacagactataagctgttt 8578584  T
Q  457 tcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataatgnnnnnnnatatagctaagcaatctgcagtactaggc 556  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||       ||||||||||||||||||||||||| |||    
T  8578585 tcataagctatcccggagagcttgtagaaataagccgaaaatagcttctagacatgtcataatgtttttttatatagctaagcaatctgcagtactgggc 8578684  T
Q  557 agaattggttttgtagtttggatcaatgaatttgaatgctaacagttttatctccctatgttgtgtttataggt 630  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8578685 agaattggttttgtagtttggatcaatgaatttgaatgctaacaattttatctccctatgttgtgtttataggt 8578758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 8578142 - 8578332
Alignment:
Q  9 atattgcaaattttaactacaaatcccaacttaacgaaaaagctttttgcaaattgcaatatattttgagacgagttttctacgatttttgctacagatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8578142 atattgcaaattttaactacaaatcccaacttaacgaaaaagctttttgcaaattgcaatatattttgagacgagttttctacgatttttgctacagatt 8578241  T
Q  109 tatctatccattacattagtaaactattgacgatatcgctttgttttcctacaaattccaaagttacagaaaaatttgcaggaaatcaacaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8578242 tatctatccattacattagtaaactattgacgatatcgctttgttttcctacaaattcc-aagttacagaaaaatttgcaggaaatcaacaa 8578332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 401 - 503
Target Start/End: Original strand, 8603608 - 8603710
Alignment:
Q  401 gcttatagcataagcacttatcatataagttcttatgtacagactataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatag 500  Q
    |||||||||||||||||||| ||||||||| |||||||| | |||||||| | ||| |||||| ||||| ||||||||||||||||| ||| | ||||||    
T  8603608 gcttatagcataagcacttaccatataagtgcttatgtataaactataagctatttgcataagttatcctggagagcttgtagaaatgagcggaaaatag 8603707  T
Q  501 ctt 503  Q
    |||    
T  8603708 ctt 8603710  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 439
Target Start/End: Original strand, 35869744 - 35869782
Alignment:
Q  401 gcttatagcataagcacttatcatataagttcttatgta 439  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35869744 gcttatagcataagcacttatcatataagttcttatgta 35869782  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 12972753 - 12972801
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||  |||||||||||||||| ||||||||||||| ||||||||    
T  12972753 ttaattaagcgcttatagcataagcatttatcatataagtgcttatgta 12972801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 6509374 - 6509328
Alignment:
Q  444 ctataaggtgttttcataagctatcccggagagcttgtagaaataag 490  Q
    ||||||| |||||||||||||||||| ||||||||| | ||||||||    
T  6509374 ctataagctgttttcataagctatcctggagagcttattgaaataag 6509328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 34563147 - 34563192
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttat 436  Q
    ||||||||| ||||||||||||| || ||||||||||||| |||||    
T  34563147 ttaattaaacgcttatagcataaacatttatcatataagtgcttat 34563192  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 430 - 504
Target Start/End: Original strand, 514752 - 514826
Alignment:
Q  430 ttcttatgtacagactataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttc 504  Q
    ||||||||||||  ||||||| |||||||||||||||||| |||||||||||  |||||||| | ||||| ||||    
T  514752 ttcttatgtacaacctataagctgttttcataagctatcctggagagcttgtcaaaataagctgaaaataacttc 514826  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 515
Target Start/End: Original strand, 39505958 - 39506026
Alignment:
Q  447 taaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtca 515  Q
    |||| |||||||||||||||| | |||||| || | ||||||||| | |||||||||| ||||||||||    
T  39505958 taagttgttttcataagctattctggagagtttatggaaataagctgaaaatagcttccagacatgtca 39506026  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 436
Target Start/End: Original strand, 26030895 - 26030928
Alignment:
Q  403 ttatagcataagcacttatcatataagttcttat 436  Q
    |||||||||||||||||||||||||||| |||||    
T  26030895 ttatagcataagcacttatcatataagtacttat 26030928  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 7100790 - 7100742
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    |||||||||||||||||| ||||||  ||||||||||||| ||| ||||    
T  7100790 ttaattaaatgcttatagtataagcgtttatcatataagtacttgtgta 7100742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 18749975 - 18749935
Alignment:
Q  399 atgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||||||||||| |||||||||||||| ||| ||||    
T  18749975 atgcttatagcataagctcttatcatataagtacttgtgta 18749935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 425
Target Start/End: Original strand, 30133950 - 30133982
Alignment:
Q  393 aattaaatgcttatagcataagcacttatcata 425  Q
    ||||||||||||||||||||||| |||||||||    
T  30133950 aattaaatgcttatagcataagcgcttatcata 30133982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 429
Target Start/End: Complemental strand, 31751902 - 31751870
Alignment:
Q  397 aaatgcttatagcataagcacttatcatataag 429  Q
    ||||||||||||||||| |||||||||||||||    
T  31751902 aaatgcttatagcataatcacttatcatataag 31751870  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 439
Target Start/End: Original strand, 24443945 - 24443983
Alignment:
Q  401 gcttatagcataagcacttatcatataagttcttatgta 439  Q
    |||||||||||||||||||||||||||||||||||||||    
T  24443945 gcttatagcataagcacttatcatataagttcttatgta 24443983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 4471067 - 4471114
Alignment:
Q  390 tttaattaaatgcttatagcataagcacttatcatataagttcttatg 437  Q
    ||||||||| ||||||||||||||||| |||| |||||||| ||||||    
T  4471067 tttaattaactgcttatagcataagcaattattatataagtgcttatg 4471114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 445 - 499
Target Start/End: Original strand, 3175951 - 3176005
Alignment:
Q  445 tataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaata 499  Q
    |||||| |||||||||||||||||| | || ||||||||||||||| || |||||    
T  3175951 tataagctgttttcataagctatcctgaagggcttgtagaaataagtcgaaaata 3176005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 491
Target Start/End: Original strand, 29263371 - 29263416
Alignment:
Q  446 ataaggtgttttcataagctatcccggagagcttgtagaaataagc 491  Q
    ||||| |||||||||||||||||| | ||||||||| |||||||||    
T  29263371 ataagttgttttcataagctatcctgcagagcttgtggaaataagc 29263416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 485978 - 486026
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||  ||||||||||||||| ||||||||| |||| ||||||||    
T  485978 ttaattaagcgcttatagcataagcgcttatcataaaagtgcttatgta 486026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 46053597 - 46053645
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||  ||||||||||| || ||||||||||||||| ||||||||    
T  46053597 ttaattaagcgcttatagcatgagtacttatcatataagtacttatgta 46053645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 26214 - 26174
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagtt 431  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  26214 ttaattaagtgcttatagcataagcacttatcatataagtt 26174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 452 - 503
Target Start/End: Complemental strand, 44284143 - 44284092
Alignment:
Q  452 tgttttcataagctatcccggagagcttgtagaaataagccggaaatagctt 503  Q
    |||||||||||||||||| ||||||||| ||||||||||| | |||||||||    
T  44284143 tgttttcataagctatcctggagagcttatagaaataagctgaaaatagctt 44284092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 29094278 - 29094326
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||| ||||||||||||| ||||||||||||||||  |||||||    
T  29094278 ttaattaaacgcttatagcataaacacttatcatataagtgtttatgta 29094326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 28881871 - 28881833
Alignment:
Q  401 gcttatagcataagcacttatcatataagttcttatgta 439  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  28881871 gcttatagcataagaacttatcatataagctcttatgta 28881833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 503
Target Start/End: Complemental strand, 53848124 - 53848075
Alignment:
Q  454 ttttcataagctatcccggagagcttgtagaaataagccggaaatagctt 503  Q
    ||||||||| ||||||| |||||||| ||||||||||||| ||| |||||    
T  53848124 ttttcataaactatcccagagagcttatagaaataagccgaaaacagctt 53848075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 446 - 490
Target Start/End: Complemental strand, 24158572 - 24158528
Alignment:
Q  446 ataaggtgttttcataagctatcccggagagcttgtagaaataag 490  Q
    ||||| |||||||||||||||||| ||||||||| | ||||||||    
T  24158572 ataagctgttttcataagctatcctggagagcttatggaaataag 24158528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 518
Target Start/End: Complemental strand, 30923963 - 30923895
Alignment:
Q  450 ggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataa 518  Q
    ||||||||||||| ||||||  ||||| || ||||||||||| | ||| |||||  |||||||||||||    
T  30923963 ggtgttttcataacctatcctagagagtttatagaaataagctgaaaacagcttatagacatgtcataa 30923895  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 444 - 489
Target Start/End: Original strand, 33067157 - 33067202
Alignment:
Q  444 ctataaggtgttttcataagctatcccggagagcttgtagaaataa 489  Q
    ||||||| |||||||||||||||||  |||||||||||||||||||    
T  33067157 ctataagttgttttcataagctatcttggagagcttgtagaaataa 33067202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 430
Target Start/End: Complemental strand, 4247257 - 4247218
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagt 430  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  4247257 ttaattaagtgcttatagcataagtacttatcatataagt 4247218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 437
Target Start/End: Original strand, 21919971 - 21920017
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatg 437  Q
    ||||||||  |||||||||||||| ||||||||||||||| ||||||    
T  21919971 ttaattaagcgcttatagcataagtacttatcatataagtgcttatg 21920017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 31668847 - 31668810
Alignment:
Q  402 cttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  31668847 cttatagcataagcaattatcatataagtgcttatgta 31668810  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 31337920 - 31337968
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||||| ||||||||||||| |||||  ||||||| ||||||||    
T  31337920 ttaattaaatgtttatagcataagcgcttattgtataagtacttatgta 31337968  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 428
Target Start/End: Original strand, 8472007 - 8472043
Alignment:
Q  392 taattaaatgcttatagcataagcacttatcatataa 428  Q
    ||||||||||||| |||||||||||||||||||||||    
T  8472007 taattaaatgcttttagcataagcacttatcatataa 8472043  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 26516195 - 26516243
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||  ||||||||||||||| |||||||||||||| ||||||||    
T  26516195 ttaattaagcgcttatagcataagcgcttatcatataagtgcttatgta 26516243  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 31687924 - 31687968
Alignment:
Q  393 aattaaatgcttatagcataagcacttatcatataagttcttatg 437  Q
    |||||||||||||||||||| || |||||||||||||| ||||||    
T  31687924 aattaaatgcttatagcataggcgcttatcatataagtgcttatg 31687968  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 447 - 491
Target Start/End: Complemental strand, 40205142 - 40205098
Alignment:
Q  447 taaggtgttttcataagctatcccggagagcttgtagaaataagc 491  Q
    |||| |||||||||||||||||| ||||||||| |||||||||||    
T  40205142 taagttgttttcataagctatcctggagagcttatagaaataagc 40205098  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 439
Target Start/End: Complemental strand, 6738582 - 6738532
Alignment:
Q  389 gtttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||||  | ||||||||||| |||||||||||||||| ||||||||    
T  6738582 gtttaattaagagtttatagcataaacacttatcatataagtacttatgta 6738532  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 445 - 491
Target Start/End: Complemental strand, 28409435 - 28409389
Alignment:
Q  445 tataaggtgttttcataagctatcccggagagcttgtagaaataagc 491  Q
    |||||| | |||| ||||||||||||||||| |||||||||||||||    
T  28409435 tataagctatttttataagctatcccggagaacttgtagaaataagc 28409389  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 436
Target Start/End: Complemental strand, 913040 - 912995
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttat 436  Q
    |||||||||||||||||  |||| |||||||||||||||| |||||    
T  913040 ttaattaaatgcttatactataaacacttatcatataagtacttat 912995  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 518
Target Start/End: Original strand, 4855698 - 4855771
Alignment:
Q  445 tataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataa 518  Q
    |||||| ||||||||||| |||||||  |||||||  |||||||||||| ||| ||||||   |||||||||||    
T  4855698 tataagttgttttcataaactatcccaaagagcttacagaaataagccgaaaacagcttctgaacatgtcataa 4855771  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 439
Target Start/End: Complemental strand, 20982305 - 20982260
Alignment:
Q  394 attaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||| |||||||||||||||  |||||||||||||| ||||||||    
T  20982305 attaagtgcttatagcataagtgcttatcatataagtgcttatgta 20982260  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 439
Target Start/End: Complemental strand, 38819749 - 38819700
Alignment:
Q  390 tttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    |||||||||||  |||| ||||||||||||||||||||||  ||||||||    
T  38819749 tttaattaaatttttatggcataagcacttatcatataagggcttatgta 38819700  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 390 - 430
Target Start/End: Original strand, 6725133 - 6725173
Alignment:
Q  390 tttaattaaatgcttatagcataagcacttatcatataagt 430  Q
    ||||||||| |||||||||||||||  ||||||||||||||    
T  6725133 tttaattaagtgcttatagcataagtgcttatcatataagt 6725173  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 439
Target Start/End: Complemental strand, 14716643 - 14716595
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    |||||||| ||||||||||||||| | || |||||||||| ||||||||    
T  14716643 ttaattaagtgcttatagcataaggatttgtcatataagtgcttatgta 14716595  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 23999053 - 23999101
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    |||||||||||||||||| |||||  |||||||||||||| ||| ||||    
T  23999053 ttaattaaatgcttatagaataagggcttatcatataagtgcttgtgta 23999101  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 43591573 - 43591534
Alignment:
Q  452 tgttttcataagctatcccggagagcttgtagaaataagc 491  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  43591573 tgttttcataagctatcccgaagagcttgtggaaataagc 43591534  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 490
Target Start/End: Complemental strand, 9878753 - 9878707
Alignment:
Q  444 ctataaggtgttttcataagctatcccggagagcttgtagaaataag 490  Q
    ||||||| |||||||||  |||||||||||||||||| |||||||||    
T  9878753 ctataagttgttttcattcgctatcccggagagcttgaagaaataag 9878707  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 427
Target Start/End: Original strand, 29419801 - 29419839
Alignment:
Q  389 gtttaattaaatgcttatagcataagcacttatcatata 427  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  29419801 gtttaattaaatgcttatagcataaaaacttatcatata 29419839  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 19333456 - 19333411
Alignment:
Q  393 aattaaatgcttatagcataagcacttatcatataagttcttatgt 438  Q
    ||||||| |||||||||||||||||||| || |||||| |||||||    
T  19333456 aattaaacgcttatagcataagcacttaccacataagtgcttatgt 19333411  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 430
Target Start/End: Complemental strand, 42817551 - 42817510
Alignment:
Q  389 gtttaattaaatgcttatagcataagcacttatcatataagt 430  Q
    |||||||||| ||||||||||||||||  |||||||||||||    
T  42817551 gtttaattaagtgcttatagcataagcgtttatcatataagt 42817510  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 2400053 - 2400101
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||||| |||| |||||| || ||||||||||||| ||||||||    
T  2400053 ttaattaaatgtttatggcataaacaattatcatataagtgcttatgta 2400101  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 9404511 - 9404555
Alignment:
Q  405 atagcataagcacttatcatataagttcttatgtacagactataa 449  Q
    ||||||||| |||||||||||||||| |||||||| | |||||||    
T  9404511 atagcataaacacttatcatataagtgcttatgtataaactataa 9404555  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 34339032 - 34339068
Alignment:
Q  403 ttatagcataagcacttatcatataagttcttatgta 439  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  34339032 ttatagcataaacacttatcatataagtgcttatgta 34339068  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 411 - 447
Target Start/End: Original strand, 37053511 - 37053547
Alignment:
Q  411 taagcacttatcatataagttcttatgtacagactat 447  Q
    |||||||||||||||||||| |||||||| |||||||    
T  37053511 taagcacttatcatataagtgcttatgtatagactat 37053547  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 516
Target Start/End: Original strand, 39983341 - 39983413
Alignment:
Q  444 ctataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcat 516  Q
    ||||||| |||||||||||||||||| ||||||||  |  |||||| | | |||||||||  |||||||||||    
T  39983341 ctataagttgttttcataagctatcctggagagctaatgaaaataaactgaaaatagcttatagacatgtcat 39983413  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 402 - 430
Target Start/End: Complemental strand, 43965292 - 43965264
Alignment:
Q  402 cttatagcataagcacttatcatataagt 430  Q
    |||||||||||||||||||||||||||||    
T  43965292 cttatagcataagcacttatcatataagt 43965264  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 518
Target Start/End: Complemental strand, 160043 - 159970
Alignment:
Q  445 tataaggtgttttcataagctatcccggagagcttgtagaaataagccggaaatagcttcaagacatgtcataa 518  Q
    |||||| ||||||||||||||||||   ||||||||| ||||||||| | |||  ||||  |||||||||||||    
T  160043 tataagatgttttcataagctatcctaaagagcttgtggaaataagctgaaaactgcttatagacatgtcataa 159970  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 4699676 - 4699639
Alignment:
Q  454 ttttcataagctatcccggagagcttgtagaaataagc 491  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  4699676 ttttcataaactatcccggagagcttatagaaataagc 4699639  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 439
Target Start/End: Original strand, 27473 - 27521
Alignment:
Q  391 ttaattaaatgcttatagcataagcacttatcatataagttcttatgta 439  Q
    |||| |||| ||||||||||||||| |||||||| ||||| ||||||||    
T  27473 ttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgta 27521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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