View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-16 (Length: 593)
Name: NF1320F-Insertion-16
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 8 - 593
Target Start/End: Complemental strand, 47457183 - 47456579
Alignment:
| Q |
8 |
aaatcatcttgtttggaaattggaacacttaaaaactacagaatagaaaataatt-------------------tgcaaatcctatataaaaatagatag |
88 |
Q |
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| T |
47457183 |
aaatcatcttgtttggaaattggaacacttaaaaactacagaatagaaaataattattcagaaactaaataatttgcaaatcctatataaaaatagatag |
47457084 |
T |
|
| Q |
89 |
gatttccaaatcattagattatacttaatgcatgataatatgtaaatgagctaagttcttaaatctaatatcactcataaacaggtttcattttaagttc |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47457083 |
gatttccaaatcattagattatacttaatgcatgataatatgtaaatgagctaagttcttaaatctaatatcactcataaacaggtttcattttaagttc |
47456984 |
T |
|
| Q |
189 |
atggtggtggagaaatcttcctgttgagattgaatccaatgtcaagtccattataagcaattggagcatacatccacagatcatcagagcttagaagcta |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47456983 |
atggtggtggagaaatcttcctgttgagattgaatccaatgtcaagtccattataagcaattggagcatacatccacagatcatcagagcttagaagcta |
47456884 |
T |
|
| Q |
289 |
tataagaaataaacattcatattaaaaagatgttattctgattgaacatatacacacagcttgatatttctaaacagaaactaattattaatcgtctata |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
47456883 |
tataagaaataaacattcatattaaaaagatgttattctgattgaacatatacacacaccttgatatttctaaacagaaactaattattaatcgtctata |
47456784 |
T |
|
| Q |
389 |
tttcgcgactcatatattaccttgatttggagctgcagaaatttcacatattggattgcatcttcaagcattgtgcttatatcaacctgtatgaccatcc |
488 |
Q |
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| T |
47456783 |
tttcgcgactcatatattaccttgatttggagctgcagaaatttcacatattggattgcatcttcaagcattgtgcttatatcaacctgtatgaccatcc |
47456684 |
T |
|
| Q |
489 |
catatatgaaattatacatctctcaaatagttacaagcccctttaaactgaaaaacattcatgcaaaaataagttacctttgttccatttggtacaagat |
588 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47456683 |
catatgtgaaattatacatctctcaaatagttacaagcccctttaaactgaaaaacattcatgcaaaaataagttacctttgttccatttggtacaagat |
47456584 |
T |
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| Q |
589 |
tctgc |
593 |
Q |
| |
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||||| |
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| T |
47456583 |
tctgc |
47456579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 211 - 293
Target Start/End: Original strand, 5272013 - 5272095
Alignment:
| Q |
211 |
gttgagattgaatccaatgtcaagtccattataagcaattggagcatacatccacagatcatcagagcttagaagctatataa |
293 |
Q |
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||||||||||| ||||| |||||||||||| ||||||| ||| ||||||||||||| |||||||||||| | |||||| |||| |
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| T |
5272013 |
gttgagattgagtccaaggtcaagtccattgtaagcaagtggtgcatacatccacatatcatcagagctcaaaagctacataa |
5272095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 221 - 287
Target Start/End: Original strand, 48145614 - 48145680
Alignment:
| Q |
221 |
aatccaatgtcaagtccattataagcaattggagcatacatccacagatcatcagagcttagaagct |
287 |
Q |
| |
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|||||||||| | |||||| ||||||||||||||||||||||||| ||| |||||||||| ||||| |
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| T |
48145614 |
aatccaatgttcattccattgtaagcaattggagcatacatccacatatcttcagagcttaaaagct |
48145680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 48140647 - 48140724
Alignment:
| Q |
210 |
tgttgagattgaatccaatgtcaagtccattataagcaattggagcatacatccacagatcatcagagcttagaagct |
287 |
Q |
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||||||| || | |||||||| | |||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
48140647 |
tgttgaggtttagtccaatgttcattccattgtaagcaattggagcatacatccagtgatcatcagagctcagaagct |
48140724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 221 - 266
Target Start/End: Original strand, 48150474 - 48150519
Alignment:
| Q |
221 |
aatccaatgtcaagtccattataagcaattggagcatacatccaca |
266 |
Q |
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|||||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
48150474 |
aatccaatgttcattccattgtaagcaattggagcatacatccaca |
48150519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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