View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-17 (Length: 786)
Name: NF1320F-Insertion-17
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-17 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 2310067 - 2309688
Alignment:
| Q |
8 |
atatataaggtaaaaacactaccacaacctcccaatttaatccatccaaatgtgacatattagattcagggctcattttctttctttctctttgcaatgc |
107 |
Q |
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| T |
2310067 |
atatataaggtaaaaaaactaccacaacctcccaatttaatccatccaaatgtgacatattagattcagggctcattttctttctttctctttgcaatgc |
2309968 |
T |
|
| Q |
108 |
atcaattatattattgagaatctttgtaggccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccc |
207 |
Q |
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| T |
2309967 |
atcaattatattattgagaatctttgtatgccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccc |
2309868 |
T |
|
| Q |
208 |
tgcgtttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttcagaagagtaaaatctcttaggtcctccga |
307 |
Q |
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| T |
2309867 |
tgcgtttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttcagaagagtaaaatctcttaggtcctccga |
2309768 |
T |
|
| Q |
308 |
tgataaatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaatcag |
387 |
Q |
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| T |
2309767 |
tgataaatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaatcag |
2309688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 443 - 786
Target Start/End: Complemental strand, 2309641 - 2309295
Alignment:
| Q |
443 |
ttagcttcttcaatggtcagattctgttaatcaatgttgtccattgtggattgcgaaaaataacattttgatcaaattctatgttaaagcgccgctattt |
542 |
Q |
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| T |
2309641 |
ttagcttcttcaatgttcagattctgttaatcaatgttgtccattgtggattgcgaaaaataacattttgatcaaattctatgttaaagcaccgctattt |
2309542 |
T |
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| Q |
543 |
gacaacacattgtacactgaataccatatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatgga |
642 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309541 |
gacaacacattgtacactgaataccatatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatgga |
2309442 |
T |
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| Q |
643 |
ctttagaggatttacgcacatgtgcgttgtggtgccgcactttgataattgattgtttcaagagagt-ttttggaattgtatttatttgattagat-aaa |
740 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |
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| T |
2309441 |
ctttagaggatttacgcacatgtgcgttgtggtgccgcactttgataattgattgtttcaagagagttttttggaattatatttatttgattagataaaa |
2309342 |
T |
|
| Q |
741 |
ctcactgaaattcattttggtctaccctctctgatg-tagttaaccc |
786 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
2309341 |
ttcactgaaattgcttttggtctaccctctctgatgttagttaaccc |
2309295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 2928981 - 2929356
Alignment:
| Q |
18 |
taaaaacactaccacaacctcccaatttaatccatccaaatgtgacatatta------gattcagggctcattttctttctttctctttgcaatgcatca |
111 |
Q |
| |
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|||||| ||||||| |||||||||||||||||||||||||||||| || || |||||| |||||||||| ||||| ||||| ||||||||||| |
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| T |
2928981 |
taaaaaaactaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagcaatgcatca |
2929080 |
T |
|
| Q |
112 |
attatattattgagaatctttgtaggccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccctgcg |
211 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2929081 |
ataatattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccctttg |
2929180 |
T |
|
| Q |
212 |
tttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttca---gaagagtaaaatctcttaggtcctccgat |
308 |
Q |
| |
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|| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |
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| T |
2929181 |
ttacattcctctcaaaagttgttgctagacaaataaaacgggttcgtttcgtgtaaggaacagtttcaaataaagagtaaaatctcttgggtcctccaat |
2929280 |
T |
|
| Q |
309 |
gataaatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaat |
384 |
Q |
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|| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||| |
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| T |
2929281 |
gacaaatggattgtgaaatttgttgttgatttcaacatttcttgttgtgcctgatctgttagaaaatgctatgaat |
2929356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 469 - 777
Target Start/End: Complemental strand, 2318751 - 2318444
Alignment:
| Q |
469 |
ttaatcaatgttgtccattgtggattgcgaaaaataacattttgatcaaattctat-gttaaagcgccgctatttgacaacacattgtacactgaatacc |
567 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||| | |||||||| |||| ||||||||||||||||||| ||||||||| || ||| |
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| T |
2318751 |
ttaatcaatgttgtccattgtggattgcaaaaaatcgcattttgtttgaattctattgttacagcgccgctatttgacaacgcattgtacaa--aacacc |
2318654 |
T |
|
| Q |
568 |
atatctcggaacaatagctgtttgttcagattctgctacactatagccactatttgacagtgctgtgttaatggactttagaggatttacgcacatgtgc |
667 |
Q |
| |
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|| |||| |||||||||| |||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||| |||| | ||| |
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| T |
2318653 |
atttctcagaacaatagcggtttgttcagattctgctacactatagccactatgtgacagcgttgtgttaatggactttagaggatttatgcacttatgc |
2318554 |
T |
|
| Q |
668 |
gttgtggtgccgcactttgataattgattgtttcaagagagtt-tttggaattgtatttatttgattagataaact-cactgaaattcattttggtctac |
765 |
Q |
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| |||||| ||||||||||||||||||||| |||||| || |||| |||| ||||| ||||||| |||||| | |||| ||| ||||||||||| |
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| T |
2318553 |
g--gtggtgttgcactttgataattgattgttgtaagagacttgtttgaaattatatttgtttgattggataaaattcactacgattgcttttggtctac |
2318456 |
T |
|
| Q |
766 |
cctctctgatgt |
777 |
Q |
| |
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||||||| |||| |
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|
| T |
2318455 |
cctctcttatgt |
2318444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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