View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320F-Insertion-19 (Length: 555)

Name: NF1320F-Insertion-19
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320F-Insertion-19
NF1320F-Insertion-19
[»] chr7 (8 HSPs)
chr7 (10-391)||(32717334-32717715)
chr7 (232-376)||(32714445-32714589)
chr7 (16-161)||(32714152-32714297)
chr7 (451-555)||(32717775-32717880)
chr7 (455-555)||(32714673-32714774)
chr7 (259-383)||(32708419-32708543)
chr7 (13-126)||(32708180-32708293)
chr7 (475-547)||(32708693-32708766)
[»] chr6 (6 HSPs)
chr6 (52-126)||(10408327-10408401)
chr6 (268-373)||(10380885-10380990)
chr6 (52-126)||(10381837-10381911)
chr6 (268-373)||(10409854-10409959)
chr6 (475-538)||(10380582-10380645)
chr6 (475-538)||(10410328-10410391)
[»] chr8 (1 HSPs)
chr8 (475-521)||(43347293-43347339)


Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 32717334 - 32717715
Alignment:
Q  10 aggaagccagttgatgtaccatttggaataaactattaccccacttgggcttttgatcatatcaaatacttcaatggtggttctgatattcaacttcatc 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32717334 aggaagccagttgatgtaccatttggaagaaactattaccccacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcaacttcatc 32717433  T
Q  110 ttgacaagtacactggttagtgcttgacaaacttcaaaactttcctatttaggccatgtttgtataaataatttaatatgtagcttataatgtaagtgtt 209  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32717434 ttgacaagtacactggttagtgcttaacaaacttcaatactttcctatttaggccatgtttgtataaataacttaatatgtagcttataatgtaagtgtt 32717533  T
Q  210 tcttactcttaaacttgttacttactatattggtcatttttctaacttctttttgtataggtactggttttcagtccaaaggttcatacttgtttggtca 309  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32717534 tcttactcttaaacttattacttactatattggtcatttttctaacttctttttgtataggtactggttttcagtccaaaggttcatacttgtttggtca 32717633  T
Q  310 tttcagtatgaacatcaagatggttcctggtgattcggctggcacagtcactgctttctatgtatgtacaaaaacaattaag 391  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32717634 tttcagtatgaacattaagatggttcctggtgattcagctggcacagtcactgctttctatgtatgtacaaaaacaattaag 32717715  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 232 - 376
Target Start/End: Original strand, 32714445 - 32714589
Alignment:
Q  232 tactatattggtcatttttctaacttctttttgtataggtactggttttcagtccaaaggttcatacttgtttggtcatttcagtatgaacatcaagatg 331  Q
    ||||| |||| |||||||||||||| ||||||  | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||    
T  32714445 tactacattgttcatttttctaactacttttttaacaggtactggttttcaatcaaaaggttcatacttgtttggtcatttcagtatgaacataaagatg 32714544  T
Q  332 gttcctggtgattcggctggcacagtcactgctttctatgtatgt 376  Q
    |||||||||||||| |||||||| || || |||||||||||||||    
T  32714545 gttcctggtgattcagctggcacggtaaccgctttctatgtatgt 32714589  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 32714152 - 32714297
Alignment:
Q  16 ccagttgatgtaccatttggaataaactattaccccacttgggcttttgatcatatcaaatacttcaatggtggttctgatattcaacttcatcttgaca 115  Q
    ||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  32714152 ccagtggatgtaccatttggaagaaactattatccaacttgggcttttgatcatatcaaatacttcaatggtggttctgagattcaacttcatcttgata 32714251  T
Q  116 agtacactggttagtgcttgacaaacttcaaaactttcctatttag 161  Q
    | |||||||||| ||| || ||| |||||| | |||| ||||||||    
T  32714252 aatacactggttggtgtttaacacacttcatagcttttctatttag 32714297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 451 - 555
Target Start/End: Original strand, 32717775 - 32717880
Alignment:
Q  451 cagctatcttcacagaatgcatagcatgatgaaatagattttgagttcttggggaacagaacaggacaacctgacattttaccaac-aatgtgttcactg 549  Q
    |||||||||||||| |||||  | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||    
T  32717775 cagctatcttcacaaaatgctgaacatgatgaaatagattttgagttcttggggaacagaacaggacaaccttacattttacaaacaaatgtgttcactg 32717874  T
Q  550 gtggac 555  Q
    ||||||    
T  32717875 gtggac 32717880  T

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Target: chr7; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 455 - 555
Target Start/End: Original strand, 32714673 - 32714774
Alignment:
Q  455 tatcttcacagaatgcatagcatgatgaaatagattttgagttcttggggaacagaacaggacaacctgacattttaccaac-aatgtgttcactggtgg 553  Q
    |||||||||| |||||  | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  32714673 tatcttcacaaaatgctgaacatgatgaaatagattttgagttcttggggaacagaacaggacaaccttacattttacaaacaaatgtgttcactggtgg 32714772  T
Q  554 ac 555  Q
    ||    
T  32714773 ac 32714774  T

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Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 259 - 383
Target Start/End: Original strand, 32708419 - 32708543
Alignment:
Q  259 tttttgtataggtactggttttcagtccaaaggttcatacttgtttggtcatttcagtatgaacatcaagatggttcctggtgattcggctggcacagtc 358  Q
    |||||| |||||||||||||| || || ||||| |||||||||||||| || || || |||||||| |||||||||||||||||||| ||||||||||||    
T  32708419 tttttgcataggtactggtttccaatctaaaggatcatacttgtttggccactttagcatgaacataaagatggttcctggtgattcagctggcacagtc 32708518  T
Q  359 actgctttctatgtatgtacaaaaa 383  Q
    || ||||| |||||| | |||||||    
T  32708519 accgctttttatgtacgaacaaaaa 32708543  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 32708180 - 32708293
Alignment:
Q  13 aagccagttgatgtaccatttggaataaactattaccccacttgggcttttgatcatatcaaatacttcaatggtggttctgatattcaacttcatcttg 112  Q
    |||||||| |||||||| |||||   |||||||   || ||||||||||||||||| ||||||||||| ||||  |||||||| ||| |||||| |||||    
T  32708180 aagccagtagatgtaccttttggtcgaaactatgtaccaacttgggcttttgatcacatcaaatactttaatgaaggttctgagattgaacttcttcttg 32708279  T
Q  113 acaagtacactggt 126  Q
    | || |||||||||    
T  32708280 ataaatacactggt 32708293  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 475 - 547
Target Start/End: Original strand, 32708693 - 32708766
Alignment:
Q  475 catgatgaaatagattttgagttcttggggaacagaacaggacaacctgacattttaccaac-aatgtgttcac 547  Q
    ||||||||||||||||||||||| ||||| || ||||||||||||||| | ||||||| ||| |||||||||||    
T  32708693 catgatgaaatagattttgagtttttgggtaatagaacaggacaaccttatattttacaaacaaatgtgttcac 32708766  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 10408327 - 10408401
Alignment:
Q  52 acttgggcttttgatcatatcaaatacttcaatggtggttctgatattcaacttcatcttgacaagtacactggt 126  Q
    |||||||||| |||||||||||||||||| |||||||||||||| ||||  ||| ||||||| |||| |||||||    
T  10408327 acttgggcttatgatcatatcaaatacttaaatggtggttctgaaattctgcttaatcttgataagtccactggt 10408401  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 373
Target Start/End: Complemental strand, 10380990 - 10380885
Alignment:
Q  268 aggtactggttttcagtccaaaggttcatacttgtttggtcatttcagtatgaacatcaagatggttcctggtgattcggctggcacagtcactgctttc 367  Q
    ||||||||| ||||| |||||||| || || || |||||||| || |||||| |||| |  |||||  |||||||||| ||||| |||||||||||||||    
T  10380990 aggtactggctttcaatccaaagggtcttatttatttggtcactttagtatgtacataagaatggtagctggtgattcagctggaacagtcactgctttc 10380891  T
Q  368 tatgta 373  Q
    ||||||    
T  10380890 tatgta 10380885  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 10381911 - 10381837
Alignment:
Q  52 acttgggcttttgatcatatcaaatacttcaatggtggttctgatattcaacttcatcttgacaagtacactggt 126  Q
    |||||||||| |||||||||||||||||| |||||||||||||| ||||  ||| ||||||| || | |||||||    
T  10381911 acttgggcttatgatcatatcaaatacttaaatggtggttctgagattctgcttaatcttgataaatccactggt 10381837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 268 - 373
Target Start/End: Original strand, 10409854 - 10409959
Alignment:
Q  268 aggtactggttttcagtccaaaggttcatacttgtttggtcatttcagtatgaacatcaagatggttcctggtgattcggctggcacagtcactgctttc 367  Q
    |||||| || ||||| |||||||| || || || |||||||| || ||||||  ||| || ||||| ||||||||||| ||||| || ||||||||||||    
T  10409854 aggtaccggctttcaatccaaagggtcttatttatttggtcactttagtatgttcataaaaatggtacctggtgattcagctggaactgtcactgctttc 10409953  T
Q  368 tatgta 373  Q
    ||||||    
T  10409954 tatgta 10409959  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 538
Target Start/End: Complemental strand, 10380645 - 10380582
Alignment:
Q  475 catgatgaaatagattttgagttcttggggaacagaacaggacaacctgacattttaccaacaa 538  Q
    |||||||| ||||||||||||||||| || ||||||||||| |||||  ||||||||| |||||    
T  10380645 catgatgagatagattttgagttcttaggaaacagaacaggtcaaccatacattttacaaacaa 10380582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 475 - 538
Target Start/End: Original strand, 10410328 - 10410391
Alignment:
Q  475 catgatgaaatagattttgagttcttggggaacagaacaggacaacctgacattttaccaacaa 538  Q
    |||||||| ||||||||||||||||| || ||||||||||| |||||  ||||||||| |||||    
T  10410328 catgatgagatagattttgagttcttaggaaacagaacaggtcaaccatacattttacaaacaa 10410391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 521
Target Start/End: Original strand, 43347293 - 43347339
Alignment:
Q  475 catgatgaaatagattttgagttcttggggaacagaacaggacaacc 521  Q
    |||||||| ||||||||||||||||| || ||||| |||||||||||    
T  43347293 catgatgagatagattttgagttcttaggtaacagtacaggacaacc 43347339  T

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