View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-20 (Length: 783)
Name: NF1320F-Insertion-20
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-20 |
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| [»] scaffold0267 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 369 - 777
Target Start/End: Complemental strand, 3838913 - 3838506
Alignment:
| Q |
369 |
atggctcgaggaaaatgataatgtcttgtgaatttggtaacagattattgtattaacatcgtcattatggatattggttgttccatatatattgatgagt |
468 |
Q |
| |
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||||| |||||||||||||||| ||||| ||||||| ||| || ||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| |
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| T |
3838913 |
atggcccgaggaaaatgataatttcttgaaaatttggaaacggaatattgtattaacatcgtcattatggatcttggttgttccatctatattgacgagt |
3838814 |
T |
|
| Q |
469 |
taaagttgtttgattatgttgtcatgtgtttagttcaatcttaaattaatggccaagattgttcactacatgtagtagcatataaaagcatatcgaatag |
568 |
Q |
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||||| ||||||||| ||||| || ||||| |||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||| | |||||| |
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| T |
3838813 |
taaagcagtttgattaagttgtaatttgtttcgttcaatcttaaattaatggccgagattgctgactacat---gtagcatataaaagcatgttgaatag |
3838717 |
T |
|
| Q |
569 |
gtcagtttagcttcaacttcataaggagaagaaaactaaaccaataaataacagtcgttataaaatgaatttggttc-aatatttttactaaattcaaac |
667 |
Q |
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|||| |||||||| |||||||||| |||||||||| ||||||||||||||||||||| | | |||| || ||||||| |||||||||||||||||||||| |
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| T |
3838716 |
gtcaatttagcttgaacttcataacgagaagaaaattaaaccaataaataacagtcgattttaaattaa-ttggttcaaatatttttactaaattcaaac |
3838618 |
T |
|
| Q |
668 |
caaaccaactctaacaaacatacattttac-atttttaagattgttcccaactcctgcat-caacttccacttaataaattggttatgaattataacctg |
765 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
3838617 |
caaaccaactctacaaaacatacattttacaatttttaagattgttcccaactcctgcatccaacttccacttactaaattggttatgaattataacctg |
3838518 |
T |
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| Q |
766 |
aagttctactca |
777 |
Q |
| |
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|||||||||||| |
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| T |
3838517 |
aagttctactca |
3838506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 3839290 - 3838959
Alignment:
| Q |
8 |
cctagaaaattagcaagctatcgattctcaactaagttattgagagaattacgcagattagtgttcaaatccagtgcagtaaaacttgtaggataatgtc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3839290 |
cctagaaaattagcaagctatcgattctcaactaagttattgagagaattaggcagatccgtgttcaaatccagtgcagtaaaacttgtaggataatgtc |
3839191 |
T |
|
| Q |
108 |
tgaagctgcaatctcaaacaataatattatagagctgtatgtgacatgttatctgattgaatgctataggaacaatttaaaatacaacagcaatcactct |
207 |
Q |
| |
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||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
3839190 |
tgaagctgcaatctcaaacaataatct--caaacttgtatgtgacatgttatctgattgaatgct---------atttaaaatacaacaacaatcactc- |
3839103 |
T |
|
| Q |
208 |
atattgttaattgcaacaatttacaatgagtgttgttccctccttgctgcaatc-aacttccaccagataaactgattgaatatatattgttacttcaaa |
306 |
Q |
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|||||||| ||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3839102 |
-tattgttacttgcagcaatttaaaatgagtgttgttccctccttgctgcaaactaacttccaccagataaactgattgaatatatattgttactttaaa |
3839004 |
T |
|
| Q |
307 |
ttctacctaagaccgacaaagattataccgaacaatgggtttatc |
351 |
Q |
| |
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|||| || |||||||||| ||||| |||||||||| |||||||| |
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| T |
3839003 |
ttctgcccaagaccgacagagattgaaccgaacaataggtttatc |
3838959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 376 - 777
Target Start/End: Complemental strand, 14388 - 13987
Alignment:
| Q |
376 |
gaggaaaatgataatgtcttgtgaatttggtaacagattattgtattaacatcgtcattatggatattggttgttccatatatattgatgagttaaagtt |
475 |
Q |
| |
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||||||||||||||| |||||| ||||||| ||| || ||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||||||| |
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| T |
14388 |
gaggaaaatgataatttcttgtaaatttggaaacggaatattgtattaacatcgtcattgtggatcttggttgttccatctataatgatgagttaaagca |
14289 |
T |
|
| Q |
476 |
gtttgattatgttgtcatgtgtttagttcaatcttaaattaatggccaagattgttcactacatgtagtagcatataaaagcatatcgaataggtcagtt |
575 |
Q |
| |
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||||||||| ||||| || ||||| ||||||||||||||||||||| |||||| | ||||||| ||||||||||||||||||| ||||||||| || |
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| T |
14288 |
gtttgattaagttgtaatttgtttcattcaatcttaaattaatggccgagattgctgactacat---gtagcatataaaagcatattcaataggtcaatt |
14192 |
T |
|
| Q |
576 |
tagcttcaacttcataaggagaagaaaactaaaccaataaataacagtc-gttataaaatgaatttggttc-aatatttttactaaattcaaaccaaacc |
673 |
Q |
| |
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|||||| |||||||||| |||||||||| |||||||||||||||||||| ||| |||||| || ||||||| |||||||||||||||||||||||||||| |
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| T |
14191 |
tagcttgaacttcataacgagaagaaaattaaaccaataaataacagtcggttttaaaattaa-ttggttcaaatatttttactaaattcaaaccaaacc |
14093 |
T |
|
| Q |
674 |
aactctaacaaacatacattttac-atttttaagattgttcccaactcctgcat-caacttccacttaataaattggttatgaattataacctgaagttc |
771 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
14092 |
aactctacaaaacatacattttacaatttttaagattgttcccaactcctgcatccaacttccacttactaaattggttatgaattataacctgaagttc |
13993 |
T |
|
| Q |
772 |
tactca |
777 |
Q |
| |
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|||||| |
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| T |
13992 |
tactca |
13987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 14772 - 14437
Alignment:
| Q |
8 |
cctagaaaattagcaagctatcgattctcaactaagttattgagagaattacgcagattagtgttcaaatccagtgcagtaaaacttgtaggataatgtc |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14772 |
cctagaaaattagcaagctatcgattctcaactaagttattgagagaattaggcagatccgtgttcaaatccagtgcagtaaaacttgtaggataatgtc |
14673 |
T |
|
| Q |
108 |
tgaagctgcaatctcaaacaataatattatagagctgtatgtgacatgttatctgattgaatgctataggaacaatttaaaatacaacagcaatcactct |
207 |
Q |
| |
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||||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
14672 |
tgaagctgcaatctcaaacaataatct--caaacttgtatgtgacatgttatctgattgaatgct---------atttaaaatacaacaacaatcactc- |
14585 |
T |
|
| Q |
208 |
atattgttaattgcaacaatttacaatgagtgttgttccctccttgctgcaatc-aacttccaccagataaactgattgaatatatattgttacttcaaa |
306 |
Q |
| |
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|||||||| ||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14584 |
-tattgttacttgcagcaatttaaaatgagtgttgttccctccttgctgcaaactaacttccaccagataaactgattgaatatatattgttactttaaa |
14486 |
T |
|
| Q |
307 |
ttctacctaagaccgacaaagattataccgaacaatgggtttatcgaat |
355 |
Q |
| |
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|||| || |||||||||| ||||| |||||||||| |||||||||||| |
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| T |
14485 |
ttctgcccaagaccgacagagattgaaccgaacaataggtttatcgaat |
14437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 46165431 - 46165556
Alignment:
| Q |
11 |
agaaaattagcaagctatcgattctcaactaagttattgagagaattacgcagattagtgttcaaatccagtgcagtaaaacttgta-ggataatgtctg |
109 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||| || |||| | |||||||||||| | ||| |||||||||| | ||||| |||||| |
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| T |
46165431 |
agaaaatcagcaagctatcaattctcaactaagttattgagagacttcagcagctcagtgttcaaatctaatgcggtaaaacttgcagggatagtgtctg |
46165530 |
T |
|
| Q |
110 |
aagctgcaatctcaaacaataatatt |
135 |
Q |
| |
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||||||||| ||||||||||| |||| |
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| T |
46165531 |
aagctgcaacctcaaacaatattatt |
46165556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 46237795 - 46237719
Alignment:
| Q |
19 |
agcaagctatcgattctcaactaagttattgagagaattacgcagattagtgttcaaatccagtgcagtaaaacttg |
95 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| || |||| | | |||| ||||| | ||| |||||||||| |
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| T |
46237795 |
agcaagctatcaattctcaactaagttattgagagacttcagcagctcactgtttaaatctaatgcggtaaaacttg |
46237719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 207
Target Start/End: Complemental strand, 31669910 - 31669871
Alignment:
| Q |
168 |
atgctataggaacaatttaaaatacaacagcaatcactct |
207 |
Q |
| |
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|||||||| |||||||||||||||||||| |||||||||| |
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| T |
31669910 |
atgctataagaacaatttaaaatacaacaacaatcactct |
31669871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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