View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320F-Insertion-21 (Length: 532)
Name: NF1320F-Insertion-21
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 33645042 - 33645464
Alignment:
| Q |
16 |
gcttctcttagtagacgctttagcgtctattgttttgtcagccatgacgaacgacgtttggcgaagtagcatagtagagacagtacagctgttatggagg |
115 |
Q |
| |
|
|||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33645042 |
gcttctcttaatagacgctttaccgtcaattgttttgtcagccatgacgaacgacgtttggcgaagtagcatagtagagacagtacagctgttatggagg |
33645141 |
T |
|
| Q |
116 |
ctccaactgtgatcactgcaaacaatcatgtagcattgatcaaaattctacatgaccaaagaaaatcatata-gctaatgagtcctagggttggataata |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |
|
|
| T |
33645142 |
ctccaactgtgatcactgcaaacaatcatgtagcattgatcaaaattctacatgaccaaagaaaatcataaaagctaatgagtcctagggttggaaaata |
33645241 |
T |
|
| Q |
215 |
ttgagattgtacctccaagaagtacaccaattctgagtgcctttccacatttgctagaccctagtgttgaaggactgcaacgtgatactgatgattaggc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
33645242 |
ttgagattgtacctccaagaagtacaccaattctgagtgcctttccacatttgctagacccaagtgttgaaggactgcaacgtgaaactgatgataaggc |
33645341 |
T |
|
| Q |
315 |
aaagacataatacatggatgagaagagtataaatatttatcactatactcaaggaaagtgaaatagttagtagtagtgcagtcactagttatcggatgtg |
414 |
Q |
| |
|
||| |||||| |||||||| |||| ||| ||||||||| ||||||||| ||||||| | ||||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
33645342 |
aaacacataaaacatggattagaaaagttcaaatatttagcactatacttaaggaaaatcaaatagttagtagtactgcagtcactaattatcggatttg |
33645441 |
T |
|
| Q |
415 |
gattccaccaagtaaacgtacga |
437 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
33645442 |
gattccaccaagtaaacgtacga |
33645464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 294
Target Start/End: Original strand, 12403968 - 12404023
Alignment:
| Q |
239 |
caccaattctgagtgcctttccacatttgctagaccctagtgttgaaggactgcaa |
294 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||| |||||||||||||| ||||||| |
|
|
| T |
12403968 |
caccaattctgagtgctttttaacatctgctaggccctagtgttgaagaactgcaa |
12404023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University