View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-23 (Length: 829)
Name: NF1320F-Insertion-23
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-23 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 259 - 829
Target Start/End: Original strand, 37386007 - 37386582
Alignment:
| Q |
259 |
ttcaaatatattttctctttaaatttgacttgtgttttgtatatatagttgagaataaataatttgtcctaacaatgatatttggacacacaattccaac |
358 |
Q |
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| T |
37386007 |
ttcaaatatattttctctttaaatttgacttgtgttttgcatatatagttgagaataaataatttgtcctaacaattatatttggacacacaaatccaac |
37386106 |
T |
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| Q |
359 |
actttatatagtactctcatatttagtgttagtcggatttcaaggtggagaaacacttaatacaaaatcagtagtataaggtgtaggtttagaaaaaatg |
458 |
Q |
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| T |
37386107 |
actttatatagtaccctcagatttagtattagtcggatttcgaggcggagaaacaattaatacaaaaacagtagtatatggtgtagatttaggaaaaatg |
37386206 |
T |
|
| Q |
459 |
tgtcaacaaaata-tttatggttacttttcatgctcaacaactctttgatagactaatcattgttaaacggttgtgaatactctctcctatctttattaa |
557 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| | |||||||||| |
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| T |
37386207 |
tgtcaacaaaatattttatgattacttttcatgctcaacaactctttgatagactaatcattgttaaacggttataaatactctctcatgtctttattaa |
37386306 |
T |
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| Q |
558 |
gaaggaaaacagaaaacattc--atatatattgttgcaattttttaaatatttttacaaatacgtccctataaaaaactgtgaaacattaaatacatctc |
655 |
Q |
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| T |
37386307 |
gaagaaaaacagaaaacattcatatatatattgttgcaattttttaaatatttttataaatacgtctctataaaaaactgtgaaatattaaatacatccc |
37386406 |
T |
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| Q |
656 |
taataaccattaaatgagaagtataaaagtcttctaaacaattgatacaacttaaaagttgcgacattatagaatcaattattatatttt-aaaaaattc |
754 |
Q |
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| T |
37386407 |
taataaccattaaatgaaaagtataaaagtcttctaaacaattaatacaacttagaagttgcgacattatagaatcaattattatattttaaaaaaattc |
37386506 |
T |
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| Q |
755 |
gatgtgatgaactacttcatatttcccttcccttatttattaagtttag-tttaataggaatgatccattgataga |
829 |
Q |
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| T |
37386507 |
gatgtgatgaactacttcatatttcccttcccttatttataaagtttagttttaataggaatgatccattgataga |
37386582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 37385806 - 37385914
Alignment:
| Q |
8 |
ttgagttgtgaacttgtgatggaataaatactgctttgaaaaaccgaaaatatctggttgatcgatctaagcagt----gagagactctcggacactttg |
103 |
Q |
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| T |
37385806 |
ttgagttgtgaacttgtgatggaataaatactgctttgaaaaaccgaaaatatctggttgatcgatctcagcagtgagagagagactctcggacactttg |
37385905 |
T |
|
| Q |
104 |
agcaagtgg |
112 |
Q |
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| T |
37385906 |
agcaagtgg |
37385914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 589 - 650
Target Start/End: Original strand, 40344921 - 40344982
Alignment:
| Q |
589 |
ttgcaattttttaaatatttttacaaatacgtccctataaaaaactgtgaaacattaaatac |
650 |
Q |
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| T |
40344921 |
ttgcaactttttgaatatttttacaaatatacccttataaaaaattgtgaaccattaaatac |
40344982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 585 - 654
Target Start/End: Complemental strand, 30615279 - 30615210
Alignment:
| Q |
585 |
attgttgcaattttttaaatatttttacaaatacgtccctataaaaaactgtgaaacattaaatacatct |
654 |
Q |
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| T |
30615279 |
attgttgtaactttttaaatatttttacaaatacacctttataaaaaattatgaaacattaaatacatct |
30615210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 593 - 654
Target Start/End: Original strand, 28165118 - 28165179
Alignment:
| Q |
593 |
aattttttaaatatttttacaaatacgtccctataaaaaactgtgaaacattaaatacatct |
654 |
Q |
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| T |
28165118 |
aattttttgaatatttttacaaatatacccttataaaaaattgtgaaacattaaatacatct |
28165179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 651
Target Start/End: Complemental strand, 20949224 - 20949169
Alignment:
| Q |
596 |
tttttaaatatttttacaaatacgtccctataaaaaactgtgaaacattaaataca |
651 |
Q |
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| T |
20949224 |
tttttaaatatttttacaaatataccctcataaaaaattgtgaaacattaaataca |
20949169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 585 - 652
Target Start/End: Complemental strand, 19286043 - 19285976
Alignment:
| Q |
585 |
attgttgcaattttttaaatatttttacaaatacgtccctataaaaaactgtgaaacattaaatacat |
652 |
Q |
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|||||| ||| |||||||||| ||||||||||| |||||||| ||| |||||| |||||||||||| |
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| T |
19286043 |
attgttacaactttttaaataattttacaaatatatccctatagaaagttgtgaaccattaaatacat |
19285976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 596 - 651
Target Start/End: Complemental strand, 38214265 - 38214210
Alignment:
| Q |
596 |
tttttaaatatttttacaaatacgtccctataaaaaactgtgaaacattaaataca |
651 |
Q |
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||||| |||||||||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
38214265 |
tttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaataca |
38214210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 596 - 650
Target Start/End: Original strand, 2520129 - 2520183
Alignment:
| Q |
596 |
tttttaaatatttttacaaatacgtccctataaaaaactgtgaaacattaaatac |
650 |
Q |
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| T |
2520129 |
tttttgaatatttttacaaatatatcctcataaaaaattgtgaaacattaaatac |
2520183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 654
Target Start/End: Complemental strand, 40314366 - 40314309
Alignment:
| Q |
597 |
ttttaaatatttttacaaatacgtccctataaaaaactgtgaaacattaaatacatct |
654 |
Q |
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| T |
40314366 |
ttttaaatatttttacaaatatatcttcataaaaaattatgaaacattaaatacatct |
40314309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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