View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-24 (Length: 381)
Name: NF1320F-Insertion-24
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 22424275 - 22424649
Alignment:
| Q |
6 |
catctcctacatatgccaaaggtgaaggtgttgaattaatggataagatccttagagtagacctgcatgacgctatggtcgagtgtgacagaccgaaagg |
105 |
Q |
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| T |
22424275 |
catctcctacaaatgccaaagatgaaggt-ttgaattaatggataagttccttagagtagacctggatgatgccatggtcgagtgtgacagaccgaaagg |
22424373 |
T |
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| Q |
106 |
gggtcatgcaaccttcaaatggcttcaagaaattttccacaaaaatatgaacaaagccgttgagtttgagaattggcaggaggtggagggttttagagat |
205 |
Q |
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| T |
22424374 |
ggatcatgcaaccttcaaatggcttcaagaaattttccacaaaaatatgaacaaagccattgagtttgagaattggcaggaggtggagggttttagagat |
22424473 |
T |
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| Q |
206 |
tgtaatagttttgatgtagttttgtattctacttttgaagtctttgtagccgtttatgattcttgttttctgtatttatatacatctttttgtatgtcta |
305 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |
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| T |
22424474 |
tgtaatagttttgatgtagttttgtattcttcttttgaagtctttgtagccgtttatgatttttgttttctatatttatatacatctttttgtaggtcta |
22424573 |
T |
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| Q |
306 |
aattttatatttatgtaaatctattaaacacttgatgttggaaataacttttatttgattcaatcttcgtcttttt |
381 |
Q |
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|| ||||||||| |||| ||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
22424574 |
aactttatatttttgtatatctattaaacactttatgtttgaaataacttttatttaattcaatcttcgtcttttt |
22424649 |
T |
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