View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320F-Insertion-25 (Length: 757)

Name: NF1320F-Insertion-25
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320F-Insertion-25
NF1320F-Insertion-25
[»] chr2 (29 HSPs)
chr2 (9-757)||(30147098-30147850)
chr2 (463-757)||(30279395-30279692)
chr2 (463-757)||(30171070-30171364)
chr2 (463-686)||(30790136-30790360)
chr2 (501-721)||(30029510-30029732)
chr2 (501-721)||(30223648-30223870)
chr2 (463-627)||(30184721-30184885)
chr2 (463-609)||(30022796-30022942)
chr2 (463-609)||(30037753-30037899)
chr2 (463-609)||(30081202-30081348)
chr2 (463-609)||(30107231-30107377)
chr2 (463-609)||(30119180-30119326)
chr2 (463-609)||(30133879-30134025)
chr2 (463-609)||(30231891-30232037)
chr2 (465-732)||(30251785-30252054)
chr2 (463-655)||(30068081-30068273)
chr2 (501-695)||(30103539-30103734)
chr2 (337-397)||(7696838-7696898)
chr2 (327-425)||(23192910-23193008)
chr2 (325-387)||(24957726-24957788)
chr2 (302-387)||(22646268-22646353)
chr2 (337-425)||(23606984-23607072)
chr2 (337-425)||(23618526-23618614)
chr2 (325-389)||(23804815-23804879)
chr2 (325-425)||(23824533-23824632)
chr2 (325-425)||(23826477-23826576)
chr2 (501-580)||(30092191-30092270)
chr2 (501-580)||(30114044-30114123)
chr2 (501-580)||(30128796-30128875)
[»] scaffold1156 (1 HSPs)
scaffold1156 (325-425)||(1491-1591)
[»] chr3 (10 HSPs)
chr3 (267-460)||(8133779-8133971)
chr3 (325-425)||(134599-134699)
chr3 (316-424)||(12847025-12847133)
chr3 (316-425)||(10168846-10168955)
chr3 (302-387)||(10790213-10790298)
chr3 (328-387)||(7343832-7343891)
chr3 (332-430)||(13040309-13040407)
chr3 (332-430)||(13048386-13048484)
chr3 (319-387)||(14685510-14685578)
chr3 (325-430)||(12023890-12023994)
[»] scaffold0178 (2 HSPs)
scaffold0178 (325-425)||(25019-25119)
scaffold0178 (325-425)||(30521-30621)
[»] scaffold0100 (1 HSPs)
scaffold0100 (302-389)||(6992-7079)
[»] scaffold0319 (1 HSPs)
scaffold0319 (327-425)||(8030-8128)
[»] chr6 (6 HSPs)
chr6 (325-395)||(26463053-26463123)
chr6 (325-387)||(16312650-16312712)
chr6 (302-387)||(23494267-23494352)
chr6 (327-425)||(19027741-19027839)
chr6 (10-87)||(20180547-20180624)
chr6 (10-87)||(22155367-22155444)
[»] chr1 (4 HSPs)
chr1 (316-430)||(21308372-21308486)
chr1 (316-430)||(22687066-22687180)
chr1 (302-387)||(41370994-41371079)
chr1 (302-395)||(22084166-22084259)
[»] scaffold0270 (1 HSPs)
scaffold0270 (329-425)||(23705-23801)
[»] scaffold0323 (1 HSPs)
scaffold0323 (302-425)||(2202-2325)
[»] scaffold0022 (1 HSPs)
scaffold0022 (314-425)||(31595-31706)
[»] chr8 (1 HSPs)
chr8 (302-387)||(1733020-1733105)
[»] chr7 (3 HSPs)
chr7 (10-87)||(11062688-11062765)
chr7 (325-387)||(14326079-14326141)
chr7 (325-395)||(13348837-13348907)
[»] scaffold0241 (1 HSPs)
scaffold0241 (327-430)||(22761-22864)
[»] scaffold0101 (1 HSPs)
scaffold0101 (302-425)||(48544-48667)
[»] scaffold0193 (1 HSPs)
scaffold0193 (316-426)||(29088-29198)
[»] scaffold0081 (1 HSPs)
scaffold0081 (327-425)||(46584-46682)
[»] scaffold0040 (1 HSPs)
scaffold0040 (327-425)||(39020-39118)
[»] scaffold0013 (3 HSPs)
scaffold0013 (316-426)||(110676-110786)
scaffold0013 (316-426)||(117504-117614)
scaffold0013 (316-426)||(125358-125468)
[»] chr4 (3 HSPs)
chr4 (327-425)||(14559243-14559341)
chr4 (327-425)||(13279579-13279677)
chr4 (327-430)||(14716492-14716595)
[»] scaffold0001 (2 HSPs)
scaffold0001 (316-425)||(117681-117790)
scaffold0001 (337-430)||(387768-387861)
[»] chr5 (1 HSPs)
chr5 (316-425)||(21527985-21528094)
[»] scaffold0023 (2 HSPs)
scaffold0023 (327-430)||(82712-82815)
scaffold0023 (302-380)||(15481-15559)
[»] scaffold0108 (1 HSPs)
scaffold0108 (327-387)||(41921-41981)
[»] scaffold0064 (2 HSPs)
scaffold0064 (327-387)||(29706-29766)
scaffold0064 (327-387)||(41697-41757)
[»] scaffold0046 (1 HSPs)
scaffold0046 (316-380)||(28578-28642)
[»] scaffold0019 (1 HSPs)
scaffold0019 (316-380)||(153742-153806)


Alignment Details
Target: chr2 (Bit Score: 615; Significance: 0; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 9 - 757
Target Start/End: Original strand, 30147098 - 30147850
Alignment:
Q  9 catttggctatcagccaaatttagtggcaaggcaattcagtttaatccaaacccgttccagctcatttttcaaagctaagagagacataaagagaccaaa 108  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  30147098 catttggctatcagccaaatttagtggcaaggcaattcggtttaatccaaacccatcccggctcatttttcaaagctaagagagacataaagagaccaaa 30147197  T
Q  109 gtccgaacaacgatgggggacatatcttcataaattcaacgaagtagttccagacttcaaacatgtccatttcgaactctcatatgaatgcactaaatcg 208  Q
    | ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30147198 gcccgaacaacgatgggggacatatcttcctaaatttaacgaagtagttccagacttcaaacctgtccatttcgaactctcatatgaatgcactaaatcg 30147297  T
Q  209 ttctttgaattgtggagaggatacttcgttgacaaaagaaaaaagtgaaattagacattttgctttctgagctgatctctgtttttaattgtctgcagac 308  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  30147298 ttctttaaattgtggagaggatacttcgttgacaaaagaaaaaagtgaacttagacatttttctttctgagctgatctctgtttttaattttctgcagac 30147397  T
Q  309 aaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtt 408  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30147398 aaaaacaaag-aaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtt 30147496  T
Q  409 tattatgctgctaaaacactaaaagaaaaacctttagaaagaattccaacatgtaattcca--atccaatctcttaccagattaaaatcttttgaagtca 506  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||||| |||||||||    
T  30147497 tattatgctgctaaaacactaaaagaaaaacttttagaaagaattgcaacatgtaattccaatatccattctcttaccagattaaaatctattgaagtca 30147596  T
Q  507 aaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcctcaacttcttgaaataaaaatttctaattgcaaaatgattacaga 606  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30147597 aaggttgtgagaagttgaagcatctgttttggtattccctcgttagtgaccttcctcaacttcttgatataaaaatttctaattgcaaaatgattacaga 30147696  T
Q  607 aataatagctgtgtaaacatcagaagctaataaagagatcaacaagattctgtccccc-agttgcgttctcttgaacttgaacgtttgccgagactc-gt 704  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |    
T  30147697 aataatagttgtgcaaacatcagaagctaataaagagatcaacaagattctgtcccccaagttgcgttctcttgaacttgaacgtttgccgagactcatt 30147796  T
Q  705 agtttctgttctgtgcctttgacagctgcac-atgcacaccatttgcactaatt 757  Q
    ||||||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  30147797 agtttctgttctgtgcctttgacagctgcacaatgcacaccgttggcactaatt 30147850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 463 - 757
Target Start/End: Original strand, 30279395 - 30279692
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||    
T  30279395 aattccaattcaatctcttaccagattaaaatctattgaagtcaaaggttgtgaaaagttgaagcatctgttttggtattccctcgttagtgaccttcct 30279494  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaataatagctgtgtaaacatcagaagctaataaagagatcaacaagattctg-tcc 661  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||    
T  30279495 caacttcttgaaataaaaatttctgattgcaaaatgattacagaaataatagctgtgcaaacatcggaagctaatacagagatcaacaagattctgttcc 30279594  T
Q  662 cccagttgcgttctcttgaacttgaacgtttgccgagactc-gtagtttctgttctgtgcctttgacagctgcac-atgcacaccatttgcactaatt 757  Q
    || ||||||||||||||||||||||||||||||| || |||  |||||||||||||||||||||||||||||||| ||||||||| || |||||||||    
T  30279595 ccaagttgcgttctcttgaacttgaacgtttgcccagtctcattagtttctgttctgtgcctttgacagctgcacaatgcacacctttggcactaatt 30279692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 463 - 757
Target Start/End: Original strand, 30171070 - 30171364
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |||    ||||||||||||||| |||||||||    
T  30171070 aattccaattcaatctcttaccaaattaaaatctattgaagtcaaaggttgtgagaagttgaaaaatttgtg---gtattccctcgttagagaccttcct 30171166  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaataatagctgtgtaaacatcagaagctaataaagagatcaacaagattctg-tcc 661  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||| ||| |||||  |||||||  ||||| ||||| || |||    
T  30171167 caacttcttgaaataaaaatttctgattgcaaaatgattacagaaatcgtagctgtgcaaaaatctgaagccgataaagaattcaaccagattatgttcc 30171266  T
Q  662 cccagttgcgttctcttgaacttgaacgtttgccgagactc-gtagtttctgttctgtgcctttgacagctgcac-atgcacaccatttgcactaatt 757  Q
    |  | |||||||||||||||||||||||||||||  | |||  |||||||||||||||||| |  |||||||||| || |||||| || |||||||||    
T  30171267 ctaaattgcgttctcttgaacttgaacgtttgccatgtctcattagtttctgttctgtgccatgtacagctgcacaattcacacctttggcactaatt 30171364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 463 - 686
Target Start/End: Original strand, 30790136 - 30790360
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| |||||| | |||||||||||||||||||||||||| | ||||||||  ||||||| | ||| ||||| ||||   |||||||     
T  30790136 aattccaattcaatcttttaccaaactaaaatcttttgaagtcaaaggttgtaacaagttgaagaatctgttatggtactcccttgttataaaccttccg 30790235  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaataatagctgtgtaaacatcagaagctaataaagagatcaacaagattctg-tcc 661  Q
    ||||||||  |||||||||||||| ||||  |||||||||||||||| ||||||| | ||| ||| || ||| ||||||| ||| |||||||| || |||    
T  30790236 caacttctcaaaataaaaatttctgattgtgaaatgattacagaaatcatagctgagcaaaaatctgaggctgataaagaaatcgacaagattatgttcc 30790335  T
Q  662 cccagttgcgttctcttgaacttga 686  Q
    || ||||  ||||||||||||||||    
T  30790336 ccaagttaggttctcttgaacttga 30790360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 501 - 721
Target Start/End: Original strand, 30029510 - 30029732
Alignment:
Q  501 aagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcctcaacttcttgaaataaaaatttctaattgcaaaatgat 600  Q
    ||||||| ||||| || |||||||| ||||||||||  ||||| || ||||| || |||||||||||||||||||||||||||||  |||||||||||||    
T  30029510 aagtcaatggttgcgataagttgaagcatctgttttcatattctctagttagagatcttcctcaacttcttgaaataaaaatttcggattgcaaaatgat 30029609  T
Q  601 tacagaaataatagctgtgtaaacatcagaagctaataaagagatcaacaagattctg-tcccccagttgcgttctcttgaacttgaacgtttgccgaga 699  Q
    ||||||||| ||||||| | ||||||| || | | ||| |||  | |||||| || || ||||| |||||||||  |||||||||||| |||||||  |     
T  30029610 tacagaaatcatagctgagcaaacatctgaggatgatatagaagtaaacaaggttatgttccccaagttgcgtttacttgaacttgaatgtttgcctggt 30029709  T
Q  700 ctc-gtagtttctgttctgtgcc 721  Q
    ||| |||||||||| ||||||||    
T  30029710 ctcagtagtttctgctctgtgcc 30029732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 501 - 721
Target Start/End: Original strand, 30223648 - 30223870
Alignment:
Q  501 aagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcctcaacttcttgaaataaaaatttctaattgcaaaatgat 600  Q
    ||||||| ||||| || |||||||| ||||||||||  ||||| || ||||| || |||||||||||||||||||||||||||||  |||||||||||||    
T  30223648 aagtcaatggttgcgataagttgaagcatctgttttcatattctctagttagagatcttcctcaacttcttgaaataaaaatttcggattgcaaaatgat 30223747  T
Q  601 tacagaaataatagctgtgtaaacatcagaagctaataaagagatcaacaagattctg-tcccccagttgcgttctcttgaacttgaacgtttgccgaga 699  Q
    ||||||||| ||||||| | ||||||| || | | ||| |||  | |||||| || || ||||| |||||||||  |||||||||||| |||||||  |     
T  30223748 tacagaaatcatagctgagcaaacatctgaggatgatatagaagtaaacaaggttatgttccccaagttgcgtttacttgaacttgaatgtttgcctggt 30223847  T
Q  700 ctc-gtagtttctgttctgtgcc 721  Q
    ||| |||||||||| ||||||||    
T  30223848 ctcagtagtttctgctctgtgcc 30223870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 463 - 627
Target Start/End: Complemental strand, 30184885 - 30184721
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| |||||| | ||| |||||||||||||||||||||||| ||||||||  ||||| | |  |||||||| ||||  || |||||     
T  30184885 aattccaattcaatcttttaccaaactaagatcttttgaagtcaaaggttgtgacaagttgaataatctgatatgttattcccttgttacagatcttccc 30184786  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaataatagctgtgtaaacatc 627  Q
    | ||||| |||||||||||||||||||||||||||||| |||||||| || |||||| |||||||    
T  30184785 ctacttcgtgaaataaaaatttctaattgcaaaatgatgacagaaatcatggctgtgcaaacatc 30184721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 463 - 609
Target Start/End: Original strand, 30022796 - 30022942
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| ||  || | |||||||||||||||||||||||||||| || |||||  |||||||   ||||||||| ||||| |||||||||    
T  30022796 aattccaattcaatcttttgtcaaactaaaatcttttgaagtcaaaggttgtgacaaattgaagaatctgttgcggtattcccttgttagagaccttcct 30022895  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaat 609  Q
    ||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  30022896 caacttcgtgaaataaaaattgctgattgccaaatgattacagaaat 30022942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 463 - 609
Target Start/End: Complemental strand, 30037899 - 30037753
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| ||  || | |||||||||||||||||||||||||||| || |||||  |||||||   ||||||||| ||||| |||||||||    
T  30037899 aattccaattcaatcttttgtcaaactaaaatcttttgaagtcaaaggttgtgacaaattgaagaatctgttgcggtattcccttgttagagaccttcct 30037800  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaat 609  Q
    ||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  30037799 caacttcgtgaaataaaaattgctgattgccaaatgattacagaaat 30037753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 463 - 609
Target Start/End: Original strand, 30081202 - 30081348
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| ||  || | |||||||||||||||||||||||||||| || |||||  |||||||   ||||||||| ||||| |||||||||    
T  30081202 aattccaattcaatcttttgtcaaactaaaatcttttgaagtcaaaggttgtgacaaattgaagaatctgttgcggtattcccttgttagagaccttcct 30081301  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaat 609  Q
    ||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  30081302 caacttcgtgaaataaaaattgctgattgccaaatgattacagaaat 30081348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 463 - 609
Target Start/End: Complemental strand, 30107377 - 30107231
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| ||  || | |||||||||||||||||||||||||||| || |||||  |||||||   ||||||||| ||||| |||||||||    
T  30107377 aattccaattcaatcttttgtcaaactaaaatcttttgaagtcaaaggttgtgacaaattgaagaatctgttgcggtattcccttgttagagaccttcct 30107278  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaat 609  Q
    ||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  30107277 caacttcgtgaaataaaaattgctgattgccaaatgattacagaaat 30107231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 463 - 609
Target Start/End: Complemental strand, 30119326 - 30119180
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| ||  || | |||||||||||||||||||||||||||| || |||||  |||||||   ||||||||| ||||| |||||||||    
T  30119326 aattccaattcaatcttttgtcaaactaaaatcttttgaagtcaaaggttgtgacaaattgaagaatctgttgcggtattcccttgttagagaccttcct 30119227  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaat 609  Q
    ||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  30119226 caacttcgtgaaataaaaattgctgattgccaaatgattacagaaat 30119180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 463 - 609
Target Start/End: Complemental strand, 30134025 - 30133879
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| ||  || | |||||||||||||||||||||||||||| || |||||  |||||||   ||||||||| ||||| |||||||||    
T  30134025 aattccaattcaatcttttgtcaaactaaaatcttttgaagtcaaaggttgtgacaaattgaagaatctgttgcggtattcccttgttagagaccttcct 30133926  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaat 609  Q
    ||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  30133925 caacttcgtgaaataaaaattgctgattgccaaatgattacagaaat 30133879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 463 - 609
Target Start/End: Complemental strand, 30232037 - 30231891
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| ||  || | |||||||||||||||||||||||||||| || |||||  |||||||   ||||||||| ||||| |||||||||    
T  30232037 aattccaattcaatcttttgtcaaactaaaatcttttgaagtcaaaggttgtgacaaattgaagaatctgttgcggtattcccttgttagagaccttcct 30231938  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaat 609  Q
    ||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  30231937 caacttcgtgaaataaaaattgctgattgccaaatgattacagaaat 30231891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 465 - 732
Target Start/End: Original strand, 30251785 - 30252054
Alignment:
Q  465 ttccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcctca 564  Q
    ||||||| | |||| |||||| |||||||||| ||||||||||||||||||| ||||||||  || ||||   ||||||||| ||||   | ||||||||    
T  30251785 ttccaattccatcttttaccaaattaaaatctcttgaagtcaaaggttgtgaaaagttgaagaatttgttacggtattcccttgttaaaaatcttcctca 30251884  T
Q  565 acttcttgaaataaaaatttctaattgcaaaatgattacagaaataatagctgtgtaaacatcagaagctaataaagagatcaacaagattctg-tcccc 663  Q
     ||||| ||||||||||||||| | |||||||||||||| ||||| || | || | ||||||| || ||| ||||||| ||  |||| ||| || |||||    
T  30251885 tcttctcgaaataaaaatttctgactgcaaaatgattacggaaatcattgttgagcaaacatctgaggctgataaagaaattgacaatattatgttcccc 30251984  T
Q  664 cagttgcgttctcttgaacttgaacgtttgccgagactc-gtagtttctgttctgtgcctttgacagctg 732  Q
     ||||| |||||||||||||||| | ||| || || |||  ||||||||||||||| || |||| |||||    
T  30251985 aagttgtgttctcttgaacttgagcatttacctagtctcattagtttctgttctgtaccattgatagctg 30252054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 463 - 655
Target Start/End: Original strand, 30068081 - 30068273
Alignment:
Q  463 aattccaatccaatctcttaccagattaaaatcttttgaagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcct 562  Q
    ||||||||| |||||| |||||  | |||||||||||||||||||||| ||||| ||||||||  |||| || | ||| ||  | |||||  ||||||||    
T  30068081 aattccaattcaatcttttaccgaactaaaatcttttgaagtcaaaggctgtgacaagttgaagaatcttttatggtactctttggttagaaaccttcct 30068180  T
Q  563 caacttcttgaaataaaaatttctaattgcaaaatgattacagaaataatagctgtgtaaacatcagaagctaataaagagatcaacaagatt 655  Q
    |  ||||| ||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||  || ||| ||||||| ||| | ||||||    
T  30068181 cgccttctcgaaataaaaatttctgattgcaaaatgattacagaaatcatagctgagcaaacatatgatgctgataaagaaatcgataagatt 30068273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 501 - 695
Target Start/End: Original strand, 30103539 - 30103734
Alignment:
Q  501 aagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcctcaacttcttgaaataaaaatttctaattgcaaaatgat 600  Q
    ||||||| ||||| || |||||||| ||||||||||  ||||| || ||||| || |||||||||||||||||||||||||||||  |||||||||||||    
T  30103539 aagtcaatggttgcgataagttgaagcatctgttttcatattctctagttagagatcttcctcaacttcttgaaataaaaatttcggattgcaaaatgat 30103638  T
Q  601 tacagaaataatagctgtgtaaacatcagaagctaataaagagatcaacaagattctg-tcccccagttgcgttctcttgaacttgaacgtttgcc 695  Q
    ||||||||| ||| ||| | ||||||| || | | ||| |||  | |||||| || || ||||| |||||| ||  |||||||||||| |||||||    
T  30103639 tacagaaatcataactgagcaaacatctgaggatgatatagaagtaaacaaggttatgttccccaagttgcatttacttgaacttgaatgtttgcc 30103734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 337 - 397
Target Start/End: Original strand, 7696838 - 7696898
Alignment:
Q  337 attcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatctta 397  Q
    ||||||||||||||||||||| |||| | |||| ||||||||||||||| |||||||||||    
T  7696838 attcgagaaattcaagctttctaaaaattctttcaaactgtatatgatcttttacatctta 7696898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 23192910 - 23193008
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||| ||||||||||||||||| | ||||| |   |||| ||||||||||| || |||||    
T  23192910 aggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtatatgatcctctccatctaaagaggacagtttattatgcggccaaaac 23193008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 24957788 - 24957726
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    ||||||| ||| |||||||||||||||||||| ||||| | |||| |||||||||||||||||    
T  24957788 aaaggtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactgtatatgatcct 24957726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 22646353 - 22646268
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    |||||| |||| | |||||||  | ||||| ||| |||||||||||||||||||| ||||| | |||| |||||||||||||||||    
T  22646353 tgcagaaaaaatcgaagaaaaacagaggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtatatgatcct 22646268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 23606984 - 23607072
Alignment:
Q  337 attcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    |||||||||||||||||||| ||||| | |||| ||||||||||||||||| | ||||| |   |||| ||||||||||| || |||||    
T  23606984 attcgagaaattcaagcttttcaaaacttctttcaaactgtatatgatcctctccatctaaagaggacagtttattatgcggccaaaac 23607072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 425
Target Start/End: Original strand, 23618526 - 23618614
Alignment:
Q  337 attcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    |||||||||||||||||||| ||||| | |||| ||||||||||||||||| | ||||| |   |||| ||||||||||| || |||||    
T  23618526 attcgagaaattcaagcttttcaaaacttctttcaaactgtatatgatcctctccatctaaagaggacagtttattatgcggccaaaac 23618614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 23804815 - 23804879
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatccttt 389  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||| |||||| |||||| |||||    
T  23804815 aaaggtacgcatattcgagaaattcaagctttccaaaaattctttcaaactgcatatgacccttt 23804879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 23824632 - 23824533
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaa 424  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||| |||||| |||| | ||||| ||||| |   |||| ||| ||||||||||| |||    
T  23824632 aaaggtacgcatattcgagaaattcaagctttccaaaa-ttctttcaaactgcatatcaccctttgcatctaaaaaggacagttcattatgctgctcaaa 23824534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 23826576 - 23826477
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaa 424  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||| |||||| |||| | ||||| ||||| |   |||| ||| ||||||||||| |||    
T  23826576 aaaggtacgcatattcgagaaattcaagctttccaaaa-ttctttcaaactgcatatcaccctttgcatctaaaaaggacagttcattatgctgctcaaa 23826478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 580
Target Start/End: Original strand, 30092191 - 30092270
Alignment:
Q  501 aagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcctcaacttcttgaaataaaa 580  Q
    ||||||| ||||| || |||||||| ||||||||||  |||||  | |||||  | ||||||||||||||||||||||||    
T  30092191 aagtcaatggttgcgataagttgaagcatctgttttcatattctttagttagcaatcttcctcaacttcttgaaataaaa 30092270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 580
Target Start/End: Original strand, 30114044 - 30114123
Alignment:
Q  501 aagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcctcaacttcttgaaataaaa 580  Q
    ||||||| ||||| || |||||||| ||||||||||  |||||  | |||||  | ||||||||||||||||||||||||    
T  30114044 aagtcaatggttgcgataagttgaagcatctgttttcatattctttagttagcaatcttcctcaacttcttgaaataaaa 30114123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 580
Target Start/End: Original strand, 30128796 - 30128875
Alignment:
Q  501 aagtcaaaggttgtgagaagttgaaacatctgtttttgtattccctcgttagtgaccttcctcaacttcttgaaataaaa 580  Q
    ||||||| ||||| || |||||||| ||||||||||  |||||  | |||||  | ||||||||||||||||||||||||    
T  30128796 aagtcaatggttgcgataagttgaagcatctgttttcatattctttagttagcaatcttcctcaacttcttgaaataaaa 30128875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1156 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: scaffold1156
Description:

Target: scaffold1156; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 1591 - 1491
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaa 424  Q
    |||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  1591 aaaggtatgcacattcgagaaattcaagctttccaaaaattctttcaaactgtatatgatcctttacatcttagccggacagtttattatgctgctaaaa 1492  T
Q  425 c 425  Q
    |    
T  1491 c 1491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 267 - 460
Target Start/End: Original strand, 8133779 - 8133971
Alignment:
Q  267 tttgctttctgagctgatctctgtttttaattgtctgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtac 366  Q
    ||||||| |||| || || |||| |||| ||| | |||||| |||| | |||||| | |||||||  || ||||||||||| |||||||| |||||||||    
T  8133779 tttgcttcctgaactaatttctgcttttcattatgtgcagaaaaaatcgaagaaaccaaaaggtacacatattcgagaaatccaagcttttcaaaagtac 8133878  T
Q  367 tttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaacactaaaagaaaaacctttagaaagaattccaacat 460  Q
    ||  ||||| ||||||||| | |  | |||||||||||||||||||||||||| |||||  |||| ||||||| |||||||| |||||||||||    
T  8133879 ttc-aaactatatatgatcgtctgaaccttagtcggactgtttattatgctgccaaaactttaaaggaaaaacttttagaaaaaattccaacat 8133971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 425
Target Start/End: Original strand, 134599 - 134699
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaa 424  Q
    ||||||| ||| |||||||||||||||||||||||||| | |||| |||||| |||||||||||| ||||| |   |||| ||| ||||||||||| |||    
T  134599 aaaggtacgcatattcgagaaattcaagctttccaaaaattctttcaaactgcatatgatcctttgcatctaaaaaggacagttcattatgctgctcaaa 134698  T
Q  425 c 425  Q
    |    
T  134699 c 134699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 316 - 424
Target Start/End: Original strand, 12847025 - 12847133
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  |||| || ||| |||||||||||||||||||||||||| | |||| ||||||||||||| ||||| ||||| |   |||| || |||||||    
T  12847025 aagaaaaacaaagttacgcatattcgagaaattcaagctttccaaaacttctttcaaactgtatatgaccctttccatctaaagaggacagtctattatg 12847124  T
Q  416 ctgctaaaa 424  Q
    |||||||||    
T  12847125 ctgctaaaa 12847133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 316 - 425
Target Start/End: Complemental strand, 10168955 - 10168846
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||| ||| ||||||||||||| | ||||| |   |||| ||||||||||    
T  10168955 aagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaattgtatatgatcctctccatctaaaaaggacagtttattatg 10168856  T
Q  416 ctgctaaaac 425  Q
    | ||||||||    
T  10168855 cggctaaaac 10168846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 10790298 - 10790213
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    |||||| |||| | |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||| |||||||||||||||||    
T  10790298 tgcagaaaaaatcgaagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactgtatatgatcct 10790213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 328 - 387
Target Start/End: Original strand, 7343832 - 7343891
Alignment:
Q  328 ggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    |||| ||| |||||||||||||||||||| ||||| | |||| |||||||||||||||||    
T  7343832 ggtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactgtatatgatcct 7343891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 430
Target Start/End: Complemental strand, 13040407 - 13040309
Alignment:
Q  332 tgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaacactaa 430  Q
    |||| |||||||||||||||||||||||||| | |||| |||||||||| || | ||| ||||| |   |||| |  ||||||||||||||||| ||||    
T  13040407 tgcatattcgagaaattcaagctttccaaaacttctttcaaactgtatacgaccttttgcatctaaagaggacagactattatgctgctaaaacgctaa 13040309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 332 - 430
Target Start/End: Complemental strand, 13048484 - 13048386
Alignment:
Q  332 tgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaacactaa 430  Q
    |||| |||||||||||||||||||||||||| | |||| |||||||||| || | ||| ||||| |   |||| |  ||||||||||||||||| ||||    
T  13048484 tgcatattcgagaaattcaagctttccaaaacttctttcaaactgtatacgaccttttgcatctaaagaggacagactattatgctgctaaaacgctaa 13048386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 14685510 - 14685578
Alignment:
Q  319 aaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    ||||| ||||||| ||| |||||||||||||| ||||| ||||| | |||| |||||||||| ||||||    
T  14685510 aaaacaaaaggtacgcatattcgagaaattcaggcttttcaaaatttctttcaaactgtatacgatcct 14685578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 325 - 430
Target Start/End: Original strand, 12023890 - 12023994
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaa 424  Q
    ||||||| ||| ||||||||||||||||||||||| || | || | | ||| ||||||| ||||| ||||| |   |||| || ||||||||||||||||    
T  12023890 aaaggtacgcatattcgagaaattcaagctttccacaacttctatcagact-tatatgaccctttgcatctaaagaggacggtctattatgctgctaaaa 12023988  T
Q  425 cactaa 430  Q
    | ||||    
T  12023989 cgctaa 12023994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 25119 - 25019
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaa 424  Q
    ||||||| ||| ||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||  |||||  || | |||||||||||||    
T  25119 aaaggtacgcatattcgagaaattcaagctttccaaaaaatctttcaaactgtatatgatcctttgcatcttaagcggacaattcactatgctgctaaaa 25020  T
Q  425 c 425  Q
    |    
T  25019 c 25019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 325 - 425
Target Start/End: Complemental strand, 30621 - 30521
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaa 424  Q
    ||||||| ||| ||||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||  |||||  || | |||||||||||||    
T  30621 aaaggtacgcatattcgagaaattcaagctttccaaaaaatctttcaaactgtatatgatcctttgcatcttaagcggacaattcactatgctgctaaaa 30522  T
Q  425 c 425  Q
    |    
T  30521 c 30521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 302 - 389
Target Start/End: Complemental strand, 7079 - 6992
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatccttt 389  Q
    |||||| |||| |||||||||  ||||||| ||| ||||| |||||||||||||||||||| | |||| |||||||||||||||||||    
T  7079 tgcagagaaaatcaaagaaaaacaaaggtacgcatattcgtgaaattcaagctttccaaaacttctttcaaactgtatatgatccttt 6992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 327 - 425
Target Start/End: Complemental strand, 8128 - 8030
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    ||||||||| |||||||||||||||||||| ||||| | |||| ||||||||||||||||| | ||||| |   |||| ||||||||||| ||||||||    
T  8128 aggtatgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtatatgatcctctccatctaaagaggacagtttattatgcggctaaaac 8030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 26463053 - 26463123
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatct 395  Q
    ||||||| |||||||||||||||||||||||||||||| | |||| |||||| |||||||||||| |||||    
T  26463053 aaaggtacgcacattcgagaaattcaagctttccaaaaattctttcaaactgcatatgatcctttgcatct 26463123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 16312650 - 16312712
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    ||||||| ||| |||||||||||||||||||| ||||| | |||| |||||||||||||||||    
T  16312650 aaaggtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactgtatatgatcct 16312712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 23494352 - 23494267
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    |||||| |||| | |||||||  | ||||| ||| |||||||||||||||||||| ||||| | |||| |||||||||||||||||    
T  23494352 tgcagaaaaaatcgaagaaaaacagaggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtatatgatcct 23494267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 19027741 - 19027839
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||| |||||||| |||| ||| | ||||| |   |||| ||||||||||| ||||||||    
T  19027741 aggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtaaatgaccctcttcatctaaagaggacagtttattatgcggctaaaac 19027839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 20180547 - 20180624
Alignment:
Q  10 atttggctatcagccaaatttagtggcaaggcaattcagtttaatccaaacccgttccagctcatttttcaaagctaa 87  Q
    ||||||||||| ||||||||||||||| ||||||||   ||| |||||||| ||| | || |||||||||||| ||||    
T  20180547 atttggctatctgccaaatttagtggcgaggcaattttatttgatccaaactcgtcctagttcatttttcaaaactaa 20180624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 22155444 - 22155367
Alignment:
Q  10 atttggctatcagccaaatttagtggcaaggcaattcagtttaatccaaacccgttccagctcatttttcaaagctaa 87  Q
    ||||||||||| ||||||||||||||| ||||||||   ||| |||||||| ||| | || |||||||||||| ||||    
T  22155444 atttggctatctgccaaatttagtggcgaggcaattttatttgatccaaactcgtcctagttcatttttcaaaactaa 22155367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 316 - 430
Target Start/End: Complemental strand, 21308486 - 21308372
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  ||||||| ||| |||||||||||||||||||||||||| | |||| ||||||||||||| ||| | ||||| |   |||| || |||||||    
T  21308486 aagaaaaacaaaggtacgcatattcgagaaattcaagctttccaaaatttctttcaaactgtatatgaccctctgcatctaaagaggacagtctattatg 21308387  T
Q  416 ctgctaaaacactaa 430  Q
    | |||||||||||||    
T  21308386 ccgctaaaacactaa 21308372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 316 - 430
Target Start/End: Original strand, 22687066 - 22687180
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||| ||||||||||||| ||| | ||||| |   |||| || |||||||    
T  22687066 aagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactgtatatgaccctctgcatctaaagaggacagtctattatg 22687165  T
Q  416 ctgctaaaacactaa 430  Q
    | |||||||||||||    
T  22687166 ccgctaaaacactaa 22687180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 41370994 - 41371079
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    |||||| |||| | |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||| ||||| |||||||||||    
T  41370994 tgcagaaaaaatcgaagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactatatatgatcct 41371079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 22084259 - 22084166
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatct 395  Q
    |||||| |||| | |||||||  ||| ||| ||| |||| |||||||| |||||| ||||| | |||| ||||||||||||||||||| |||||    
T  22084259 tgcagagaaaatcgaagaaaaacaaatgtacgcatattctagaaattctagcttttcaaaatttctttcaaactgtatatgatcctttccatct 22084166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 23705 - 23801
Alignment:
Q  329 gtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    ||||||| |||||||||||||||||||| ||||| | |||| ||||||||||||||||| | ||||| |   |||| ||||||||||| ||||||||    
T  23705 gtatgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtatatgatcctctccatctaaagaggacagtttattatgcggctaaaac 23801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 302 - 425
Target Start/End: Complemental strand, 2325 - 2202
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcg 401  Q
    |||||| |||| | |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||| ||||||||||||||||| | ||||| |   |    
T  2325 tgcagaaaaaatcgaagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactgtatatgatcctctccatctaaagag 2226  T
Q  402 gactgtttattatgctgctaaaac 425  Q
    ||| ||| ||||||| ||||||||    
T  2225 gacagttcattatgcggctaaaac 2202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 314 - 425
Target Start/End: Complemental strand, 31706 - 31595
Alignment:
Q  314 caaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttatta 413  Q
    |||||||||  | ||||| ||| |||||||||||||||||||| ||||| | |||| ||||||||||||||||| | ||||| |   |||| ||||||||    
T  31706 caaagaaaaacagaggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtatatgatcctctccatctaaagaggacagtttatta 31607  T
Q  414 tgctgctaaaac 425  Q
    ||| ||||||||    
T  31606 tgcggctaaaac 31595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 1733105 - 1733020
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    |||||| |||| | |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||| |||||||||||||||||    
T  1733105 tgcagaaaaaatcgaagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactgtatatgatcct 1733020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 11062765 - 11062688
Alignment:
Q  10 atttggctatcagccaaatttagtggcaaggcaattcagtttaatccaaacccgttccagctcatttttcaaagctaa 87  Q
    ||||||||||||||||||||||||||| ||||||||  |||| |||| ||| ||||| || |||||||||||| ||||    
T  11062765 atttggctatcagccaaatttagtggcgaggcaatttggtttgatccgaactcgttctagttcatttttcaaaactaa 11062688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 14326079 - 14326141
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    ||||||| ||| |||||||||||||||||||| ||||| | |||| |||||||||||||||||    
T  14326079 aaaggtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactgtatatgatcct 14326141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 13348837 - 13348907
Alignment:
Q  325 aaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatct 395  Q
    ||||||| ||| |||||||||||||||||||| ||||| | |||| | | ||||||||||||||| |||||    
T  13348837 aaaggtacgcatattcgagaaattcaagcttttcaaaaattctttcagattgtatatgatcctttgcatct 13348907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 327 - 430
Target Start/End: Complemental strand, 22864 - 22761
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaaca 426  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||||||||||||||||| ||| | || || |   |||| ||||||||||| ||||||||     
T  22864 aggtacgcatattcgagaaattcaagcttttcaaaacttctttgaaactgtatatgaccctcttcacctaaagaggacagtttattatgcggctaaaacg 22765  T
Q  427 ctaa 430  Q
    ||||    
T  22764 ctaa 22761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 302 - 425
Target Start/End: Original strand, 48544 - 48667
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcg 401  Q
    |||||| |||| | |||||||  ||| ||| ||| |||||||||||||||||||| ||||| | |||| ||||||||||||||||| | ||||| |   |    
T  48544 tgcagagaaaatcgaagaaaaacaaatgtacgcatattcgagaaattcaagcttttcaaaatttctttcaaactgtatatgatcctatccatctaaagag 48643  T
Q  402 gactgtttattatgctgctaaaac 425  Q
    ||| ||| ||||||| ||||||||    
T  48644 gacagttcattatgcggctaaaac 48667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 426
Target Start/End: Original strand, 29088 - 29198
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  ||||||| ||| ||||||||||| |||||||| ||||| | |||| ||||||||||||| | | | |||||||   |||| ||||||||||    
T  29088 aagaaaaacaaaggtacgcatattcgagaaatccaagcttttcaaaacttctttcaaactgtatatgaccatcttcatcttaagaggacagtttattatg 29187  T
Q  416 ctgctaaaaca 426  Q
    | |||||||||    
T  29188 cggctaaaaca 29198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 46584 - 46682
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    ||||| ||| ||||||||||| |||||||| ||||| | |||| ||||||||||||| ||| | |||||||   |||| ||||||||||| ||||||||    
T  46584 aggtacgcatattcgagaaatccaagcttttcaaaacttctttcaaactgtatatgaccctcttcatcttaagaggacagtttattatgcggctaaaac 46682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 425
Target Start/End: Complemental strand, 39118 - 39020
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    ||||| ||| |||||||||||| ||||||| ||||| | |||| ||||||||||||||||| | ||||| |   |||| ||||||||||| ||||||||    
T  39118 aggtacgcatattcgagaaatttaagcttttcaaaacttctttcaaactgtatatgatcctctccatctaaagaggacagtttattatgcggctaaaac 39020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 110786 - 110676
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  ||||||| ||| ||||| |||||||| ||||||||||| | |||| |||||  |||||||||||| ||||| |   |||| ||| ||||||    
T  110786 aagaaaaacaaaggtacgcatattcgtgaaattcaggctttccaaaacttctttcaaactacatatgatcctttgcatctaaagaggacagttcattatg 110687  T
Q  416 ctgctaaaaca 426  Q
    |||||||||||    
T  110686 ctgctaaaaca 110676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 117614 - 117504
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  ||| ||| ||| |||| ||||||||| ||||||||||| | |||| |||||| |||||||||||| ||||| |   |||| ||| ||||||    
T  117614 aagaaaaacaaaagtacgcatattctagaaattcaggctttccaaaacttctttcaaactgcatatgatcctttgcatctaaagaggacagttcattatg 117515  T
Q  416 ctgctaaaaca 426  Q
    |||||||||||    
T  117514 ctgctaaaaca 117504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 316 - 426
Target Start/End: Complemental strand, 125468 - 125358
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  ||||||| ||| ||||| |||||||| ||||||||||| | |||| |||||  |||||||||||| ||||| |   |||| ||| ||||||    
T  125468 aagaaaaacaaaggtacgcatattcgtgaaattcaggctttccaaaacttctttcaaacttcatatgatcctttgcatctaaagaggacagttcattatg 125369  T
Q  416 ctgctaaaaca 426  Q
    |||||||||||    
T  125368 ctgctaaaaca 125358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 14559243 - 14559341
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||| ||||||||||||||||| | ||| | |   |||| ||||||||||| ||||||||    
T  14559243 aggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtatatgatcctctccatttaaagaggacagtttattatgcggctaaaac 14559341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 327 - 425
Target Start/End: Original strand, 13279579 - 13279677
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaac 425  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||| ||| ||||||||||||| | ||||| |   |||| ||||| ||||| ||||||||    
T  13279579 aggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaattgtatatgatcctctccatctaaagaggacagtttactatgcggctaaaac 13279677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 430
Target Start/End: Original strand, 14716492 - 14716595
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaaca 426  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||| |||| |||||||| | | | ||||| |   |||| ||||||||||| ||||||||     
T  14716492 aggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaaccgtatatgaccatcttcatctaaagaggacagtttattatgcggctaaaacg 14716591  T
Q  427 ctaa 430  Q
    ||||    
T  14716592 ctaa 14716595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 316 - 425
Target Start/End: Original strand, 117681 - 117790
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||| ||||||||||||| ||| | ||||| |   |||| ||||| ||||    
T  117681 aagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtatatgaccctctccatctaaagaggacagtttaatatg 117780  T
Q  416 ctgctaaaac 425  Q
    | ||||||||    
T  117781 cggctaaaac 117790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 337 - 430
Target Start/End: Complemental strand, 387861 - 387768
Alignment:
Q  337 attcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaacactaa 430  Q
    |||||||||||||||||||| ||||| | |||| |||| ||||| || ||| | ||||| |   ||||  |||||||||| |||||||||||||    
T  387861 attcgagaaattcaagcttttcaaaacttctttcaaaccgtatacgaccctcttcatctaaagaggacaatttattatgcggctaaaacactaa 387768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 316 - 425
Target Start/End: Complemental strand, 21528094 - 21527985
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatg 415  Q
    |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||| |||||||| |||| ||| | ||||| |   |||| ||||||||||    
T  21528094 aagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtacatgaccctcttcatctaaagaggacagtttattatg 21527995  T
Q  416 ctgctaaaac 425  Q
    | ||||||||    
T  21527994 cggctaaaac 21527985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 327 - 430
Target Start/End: Complemental strand, 82815 - 82712
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcctttacatcttagtcggactgtttattatgctgctaaaaca 426  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||| ||||||||||||| ||| | || || |   |||| ||||||||||| ||||||||     
T  82815 aggtacgcatattcgagaaattcaagctttacaaaacttctttcaaactgtatatgaccctcttcacctaaagaggacagtttattatgcggctaaaacg 82716  T
Q  427 ctaa 430  Q
    ||||    
T  82715 ctaa 82712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 15559 - 15481
Alignment:
Q  302 tgcagacaaaaacaaagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtata 380  Q
    |||||| |||| | |||||||  ||||||| ||| |||||||||||||||||||| ||||  | |||| ||||||||||    
T  15559 tgcagagaaaatcgaagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaagcttctttcaaactgtata 15481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 41981 - 41921
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||| ||||||| |||||||||    
T  41981 aggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtgtatgatcct 41921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 29706 - 29766
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||| ||||||| |||||||||    
T  29706 aggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtgtatgatcct 29766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 327 - 387
Target Start/End: Original strand, 41697 - 41757
Alignment:
Q  327 aggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtatatgatcct 387  Q
    ||||| ||| |||||||||||||||||||| ||||| | |||| ||||||| |||||||||    
T  41697 aggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtgtatgatcct 41757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 380
Target Start/End: Complemental strand, 28642 - 28578
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtata 380  Q
    |||||||  ||||||| ||| |||||||||||||||||||||||||| | |||| |||| |||||    
T  28642 aagaaaaacaaaggtacgcatattcgagaaattcaagctttccaaaacttctttcaaaccgtata 28578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 380
Target Start/End: Original strand, 153742 - 153806
Alignment:
Q  316 aagaaaacgaaaggtatgcacattcgagaaattcaagctttccaaaagtactttgaaactgtata 380  Q
    |||||||  ||||||| ||| |||||||||||||||||||| ||||| | |||| ||||||||||    
T  153742 aagaaaaacaaaggtacgcatattcgagaaattcaagcttttcaaaacttctttcaaactgtata 153806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University