View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-28 (Length: 155)
Name: NF1320F-Insertion-28
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-28 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 3e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 6 - 152
Target Start/End: Complemental strand, 21348331 - 21348185
Alignment:
| Q |
6 |
caaaaagacccagaaacttcaattcaaactctggaaaagaaataaaaggaaacaagaattatttcacacacccataaccataatatccagatctaaaatt |
105 |
Q |
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| T |
21348331 |
caaaaaaacccagaaacttcaactcaaactctggaaaagaaataaaaggaaacaagaattatttcacacacccataaccataatatccagatctaaaatt |
21348232 |
T |
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| Q |
106 |
atcattacactaatataatgtgatattttccgtgttaattggaagaa |
152 |
Q |
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| T |
21348231 |
atcattacactaatataatgtgatatttgccgtgttaactggaagaa |
21348185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 50724251 - 50724338
Alignment:
| Q |
51 |
aaggaaacaagaattatttcacacacccataaccataatatccagatctaaaattatcattacactaatataatgtgatattttccgt |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50724251 |
aaggaaacaagaattatttcacacacccataaccataatatccgaatctaaaattatcattacactaatataatgtgatatttaccgt |
50724338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 50788597 - 50788510
Alignment:
| Q |
51 |
aaggaaacaagaattatttcacacacccataaccataatatccagatctaaaattatcattacactaatataatgtgatattttccgt |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50788597 |
aaggaaacaagaattatttcacacacccataaccataatatccgaatctaaaattatcattacactaatataatgtgatatttaccgt |
50788510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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