View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320F-Insertion-4 (Length: 301)
Name: NF1320F-Insertion-4
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-4 |
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| [»] chr3 (10 HSPs) |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 1107251 - 1106946
Alignment:
| Q |
7 |
agtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttgacggcaatctctcgtctgtctagaacaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1107251 |
agtttcgaacataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttgacggcaatctctcgtctgtctagaacaa |
1107152 |
T |
|
| Q |
107 |
gtgtaccctaaattttatagttggaaaaa-------------gagattcaagggttttctcatctattataaccaagtgttattgcatgtttaccttata |
193 |
Q |
| |
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|||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1107151 |
gtgtaccctaaattttatagttagaaaaaattgttagaaaaagagactcaagggttttctcatctattataaccaagt--tattgcatgtttaccttata |
1107054 |
T |
|
| Q |
194 |
taccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagacagattgaagaatggaagctcaaaatct |
293 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1107053 |
taccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagacagattgaagaatggaagctcaaaatct |
1106954 |
T |
|
| Q |
294 |
tgttcgtc |
301 |
Q |
| |
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|||||||| |
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| T |
1106953 |
tgttcgtc |
1106946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 297
Target Start/End: Complemental strand, 1050125 - 1049828
Alignment:
| Q |
15 |
acataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttgacggcaatctctcgtctgtctagaacaagtgtaccc |
114 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | ||| | | ||||||||| |
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| T |
1050125 |
acataatataacttcatttttaaattctcttgttccttgtttcgaacttcctgaaagccttttgacggcaatctcttgcccatctgtagctagtgtaccc |
1050026 |
T |
|
| Q |
115 |
taaattttatagttggaaaaa-------------gagattcaagggttttctcatctattataaccaag-tgtt-attgcatgtttaccttatataccgg |
199 |
Q |
| |
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||||| ||||||||||||||| |||| ||||| | |||||||| | || || |||| |||| |||||||||||||||||||| || |
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| T |
1050025 |
taaatattatagttggaaaaaattgttagaaaatgagactcaagagatttctcatgtgttgtattcaagttgttgcatgcatgtttaccttatatactgg |
1049926 |
T |
|
| Q |
200 |
tccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagacagattgaagaatggaagctcaaaatcttgtt |
297 |
Q |
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|||||| ||||||||||| || ||||||| || || |||||||| |||||| || ||||| || | ||||||||| ||||||||||||||||||| |
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| T |
1049925 |
tccaaagccaccttctccgagtttgttatagttcgaaaagtcatttgtggcacttatcattgttgaaatattgaagaaaggaagctcaaaatcttgtt |
1049828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 1077042 - 1076922
Alignment:
| Q |
15 |
acataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttgacggcaatctctcgtctgtctagaacaagtgtaccc |
114 |
Q |
| |
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|||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | || | | | ||||||||| |
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| T |
1077042 |
acataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctctcgcccatccatagctagtgtaccc |
1076943 |
T |
|
| Q |
115 |
taaattttatagttggaaaaa |
135 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
1076942 |
taaatattatagttggaaaaa |
1076922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 1299978 - 1300098
Alignment:
| Q |
15 |
acataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttgacggcaatctctcgtctgtctagaacaagtgtaccc |
114 |
Q |
| |
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|||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | || | | | ||||||||| |
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| T |
1299978 |
acataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctctcgcccatccatagctagtgtaccc |
1300077 |
T |
|
| Q |
115 |
taaattttatagttggaaaaa |
135 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
1300078 |
taaatattatagttggaaaaa |
1300098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 135
Target Start/End: Complemental strand, 1090848 - 1090728
Alignment:
| Q |
15 |
acataaaataacttcatttttaaattctcttgttccttgttttgaacttcctgaaagccttttgacggcaatctctcgtctgtctagaacaagtgtaccc |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | | ||| | | ||||||||| |
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| T |
1090848 |
acataatataacttcatttttaaattcttttgatccttgttttgaacttcctgaaagccttttgacggcaatctcttgcccatctgtagctagtgtaccc |
1090749 |
T |
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| Q |
115 |
taaattttatagttggaaaaa |
135 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
1090748 |
taaatattatagttggaaaaa |
1090728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 1090670 - 1090550
Alignment:
| Q |
177 |
tgcatgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagacagattgaaga |
276 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| ||||||| || || |||||||| |||||| || |||||||| | |||||| | |
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| T |
1090670 |
tgcatgtttaccttatatactggtccaaagccaccttctccaagtttgttatagttcgaaaagtcatttgtggcacttatcattgtagaaatattgaaca |
1090571 |
T |
|
| Q |
277 |
atggaagctcaaaatcttgtt |
297 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
1090570 |
aaggaagctcaaaatcttgtt |
1090550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 1076864 - 1076744
Alignment:
| Q |
177 |
tgcatgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagacagattgaaga |
276 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| || |||| | || |||| ||| |||||| || |||||||| | |||||||| |
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|
| T |
1076864 |
tgcatgtttaccttatatactggtccaaagccaccttctccaagtttattatagtctgaaaagtgatttgtggcacttatcattgtagaaatattgaaga |
1076765 |
T |
|
| Q |
277 |
atggaagctcaaaatcttgtt |
297 |
Q |
| |
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| ||||||||||||||||||| |
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|
| T |
1076764 |
aaggaagctcaaaatcttgtt |
1076744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 1300156 - 1300276
Alignment:
| Q |
177 |
tgcatgtttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagacagattgaaga |
276 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||| || |||| | || |||| ||| |||||| || |||||||| | |||||||| |
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|
| T |
1300156 |
tgcatgtttaccttatatactggtccaaagccaccttctccaagtttattatagtctgaaaagtgatttgtggcacttatcattgtagaaatattgaaga |
1300255 |
T |
|
| Q |
277 |
atggaagctcaaaatcttgtt |
297 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
1300256 |
aaggaagctcaaaatcttgtt |
1300276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 5854856 - 5854815
Alignment:
| Q |
185 |
taccttatataccggtccaaaaccaccttctccaagcttgtt |
226 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
5854856 |
taccttgtataccggtccaaaaccaccttctcccagcttgtt |
5854815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 13854639 - 13854598
Alignment:
| Q |
182 |
gtttaccttatataccggtccaaaaccaccttctccaagctt |
223 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||| |
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| T |
13854639 |
gtttaccttatatactggtccaaaaccaccttccccgagctt |
13854598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 183 - 247
Target Start/End: Original strand, 22689931 - 22689995
Alignment:
| Q |
183 |
tttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggt |
247 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| || |||||||| ||||||| |||||| |
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|
| T |
22689931 |
tttaccttgtataccggtccaaaaccaccttcaccaagtttattatcatttgagaagttattggt |
22689995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 8860 - 8908
Alignment:
| Q |
182 |
gtttaccttatataccggtccaaaaccaccttctccaagcttgttatca |
230 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
8860 |
gtttaccttgtataccggtccaaaaccaccttcaccgagcttgttatca |
8908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 23360340 - 23360273
Alignment:
| Q |
184 |
ttaccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggca |
251 |
Q |
| |
|
|||||||||| || || |||||||||||||| ||||| ||||| ||||| ||||||||||| |||||| |
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|
| T |
23360340 |
ttaccttataaacaggaccaaaaccaccttcaccaagtttgttgtcatttgagaagtcattagtggca |
23360273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 23554824 - 23554723
Alignment:
| Q |
185 |
taccttatataccggtccaaaaccaccttctccaagcttgttatcattggagaagtcattggtggcatcaattattgtagacagattgaagaatggaagc |
284 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| ||||| || | ||||| | ||| || ||||||| |||||| || |||| ||||| |||||| |
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|
| T |
23554824 |
taccttgtataccggtccaaaaccaccttcaccaagtttgttgtccgttgagaacttattagttgcatcaagtattgttgaaagatcaaagaaaggaagc |
23554725 |
T |
|
| Q |
285 |
tc |
286 |
Q |
| |
|
|| |
|
|
| T |
23554724 |
tc |
23554723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 23561106 - 23561148
Alignment:
| Q |
184 |
ttaccttatataccggtccaaaaccaccttctccaagcttgtt |
226 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
23561106 |
ttaccttgtatacaggtccaaaaccaccttctccaatcttgtt |
23561148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 3979622 - 3979664
Alignment:
| Q |
186 |
accttatataccggtccaaaaccaccttctccaagcttgttat |
228 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
3979622 |
accttgtataccggtccaaaaccaccttctccaagtttgttat |
3979664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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