View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1320F-Insertion-5 (Length: 572)
Name: NF1320F-Insertion-5
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-5 |
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| [»] chr8 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 94 - 572
Target Start/End: Original strand, 5201184 - 5201667
Alignment:
| Q |
94 |
ttaaaaataaactcatttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaatattacccatca |
193 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
5201184 |
ttaaaaataaacccatttctcgccttccaaatgacccaaattgcggcttgccaaatcattctcaaacccttacggattttcttattaatattacccatcg |
5201283 |
T |
|
| Q |
194 |
cccaacattcccaatggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccatatcgcattg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5201284 |
cccaacattcccaatggacgaataagttgggtggcattacaaaattcaaatccaaccacaccatcaagttaagccaaatatttctagccatatcgcaatg |
5201383 |
T |
|
| Q |
294 |
gaggaaaatatgcgaagtagatttgggaac-----gacaccaaacacaattatggctaacatccatagataaacaactccttatctccaaattcacccta |
388 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5201384 |
gaggaaaatatgcgaagtagattcgggaaccgtcgcacaccaaacacaattatggctaacatccataggtaaacaactccttatctccaaattcacccta |
5201483 |
T |
|
| Q |
389 |
tttggaatccggtctagcaaggccttccacacaaaagtgttcaccttggttggaaccccgaatttccaaatttgacggaacaccctcctttccccttccg |
488 |
Q |
| |
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|||| ||| |||||||||||| |||||||||||||| | ||| |||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| |
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| T |
5201484 |
tttgaaatttggtctagcaaggtcttccacacaaaagcgctcatcttggttggaaccccggattttcaaatttgacgaaacaccctcctttccccttccg |
5201583 |
T |
|
| Q |
489 |
gcctaatctcctctcctatctctctcatatccaacctagcagacaaggacttcactgaaaaatttctatcatcctccaacttcc |
572 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
5201584 |
gcctaatctcctctcatatctctctcatatccaacttagcatacaaggacttcaccgaaaaatgtctatcatcctccaacttcc |
5201667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 11678343 - 11678299
Alignment:
| Q |
105 |
ctcatttctcaccttccaaatgacccaaattgcggcttgccaaat |
149 |
Q |
| |
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||||||||||||||||||||| ||||||||| |||| |||||||| |
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| T |
11678343 |
ctcatttctcaccttccaaatcacccaaattacggcatgccaaat |
11678299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 5194563 - 5194515
Alignment:
| Q |
7 |
atgaaatgtgtttgacataaaaggaaaacatatatgacaagctttttat |
55 |
Q |
| |
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||||||||||||||| |||||||||||| ||| ||||||| | |||||| |
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| T |
5194563 |
atgaaatgtgtttgatataaaaggaaaatatagatgacaaaccttttat |
5194515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 4e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 108 - 572
Target Start/End: Original strand, 2030908 - 2031379
Alignment:
| Q |
108 |
atttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaatattacccatcacccaacattcccaa |
207 |
Q |
| |
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||||||| |||||||||| |||||||| || |||||||||||||||||||||| || ||||| |||||||||| | |||| | ||||||| |||||| |
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| T |
2030908 |
atttctcgccttccaaatcacccaaatagcaacttgccaaatcattctcaaacccttccggatcttcttattaagagcaccccccgcccaacactcccaa |
2031007 |
T |
|
| Q |
208 |
tggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagtta---agccaaatatttctagccatatcgcattggaggaaaatat |
304 |
Q |
| |
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|||| ||||| ||||||||||||||||||||| ||||||||||| |||||| ||| || ||||||||||| |||||||| || |||||||||| || |
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| T |
2031008 |
tggataaataaattgggtggcattacaaaattcaaatccaaccacttcatcaaattattaagtcaaatatttcttgccatatcacaatggaggaaaagat |
2031107 |
T |
|
| Q |
305 |
gcgaagtagatttgggaacga-----caccaaacacaattatggctaacatccatagataaacaactccttatctccaaattcaccctatttggaatccg |
399 |
Q |
| |
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| ||||| |||| ||| | | ||||||||| | | ||| ||||||||| | | ||||||||| ||| ||||||||||||||| |||||||||||| |
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| T |
2031108 |
gtgaagtggattcgggtatcatcacacaccaaaca-attcatgactaacatccgttggtaaacaacttcttttctccaaattcacccgatttggaatccg |
2031206 |
T |
|
| Q |
400 |
gtctagcaaggccttccacacaaaagtgttcaccttggttggaaccccgaatttccaaatttgacggaacaccctcctttccccttccggcctaatctcc |
499 |
Q |
| |
|
|||||| | |||||||||| ||||| ||||||| ||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
2031207 |
gtctagaagagccttccacataaaagcactcaccttagttggaaccccagacttccaaatttgacgaaacactctcctttccccttccggcctaatctcc |
2031306 |
T |
|
| Q |
500 |
tctcctatctctctcatatccaacctagcagacaaggacttcactgaaaaatttctatcatcctccaacttcc |
572 |
Q |
| |
|
||||||||||| ||| |||||||| | | | ||||||||||||| ||||| | ||||| ||||||||||||| |
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| T |
2031307 |
tctcctatctccctcctatccaactttgaatacaaggacttcaccgaaaaggtcctatcctcctccaacttcc |
2031379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 5178184 - 5178138
Alignment:
| Q |
7 |
atgaaatgtgtttgacataaaaggaaaacatatatgacaagcttttt |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5178184 |
atgaaatgtgtttgacataaaaggaaaacatagatgacaagcttttt |
5178138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 284
Target Start/End: Complemental strand, 39845084 - 39844906
Alignment:
| Q |
106 |
tcatttctcaccttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaatattacccatcac-ccaacattcc |
204 |
Q |
| |
|
||||||||| |||||||||| ||||||||| | | | ||| ||||| | ||| || || || ||||||||||||||| ||| ||| |||||||||| |
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|
| T |
39845084 |
tcatttctcgccttccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttcttattaatagatcccc-cactccaacattcc |
39844986 |
T |
|
| Q |
205 |
caatggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccat |
284 |
Q |
| |
|
||||| | | ||| || |||||||||||||||||| |||| ||||||| ||||| || | ||||| ||| |||||||| |
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|
| T |
39844985 |
caatgaataattaaattcggtggcattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccat |
39844906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 118 - 328
Target Start/End: Complemental strand, 36251254 - 36251044
Alignment:
| Q |
118 |
ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttattaatattacccatcacccaacattcccaatggacgaata |
217 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||| ||| | | || | ||| ||||||| || |||| ||||||||| |||||| |||| | | |
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|
| T |
36251254 |
ttccaaataacccaaattatggcttgccaaatcatctgcaatctctcccgaacttttttattaaaatgaccccccacccaacactcccaaaggacataca |
36251155 |
T |
|
| Q |
218 |
agttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccatatcgcattggaggaaaatatgcgaagtagattt |
317 |
Q |
| |
|
| || |||||||||||||||||| |||| ||||||| ||| ||||| | ||||||||| | |||||||| || | || |||| |||||||| ||||| |
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|
| T |
36251154 |
aatttggtggcattacaaaattcaaatctaaccacaacattaagtttaaccaaatattcttcgccatatcacaaggaagaaaaagatgcgaagaagattc |
36251055 |
T |
|
| Q |
318 |
gggaacgacac |
328 |
Q |
| |
|
|||| |||||| |
|
|
| T |
36251054 |
gggagcgacac |
36251044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 38908181 - 38908123
Alignment:
| Q |
118 |
ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttctt |
176 |
Q |
| |
|
|||||||| |||||||| || ||||||| |||||||||||| || || ||||||||||| |
|
|
| T |
38908181 |
ttccaaatcacccaaatcgctgcttgcctaatcattctcaaccccttccggattttctt |
38908123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 14849161 - 14849221
Alignment:
| Q |
118 |
ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggattttcttat |
178 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||| |||| | ||||| ||||||| |
|
|
| T |
14849161 |
ttccaaataacccaaacggcggcttgccaaatcattctccaacccctccggatcttcttat |
14849221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 22350464 - 22350417
Alignment:
| Q |
129 |
ccaaattgcggcttgccaaatcattctcaaaccgttacggattttctt |
176 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||||||| |
|
|
| T |
22350464 |
ccaaattgccgcttgccaaatcattctcaaccccttccggattttctt |
22350417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 47327776 - 47327729
Alignment:
| Q |
129 |
ccaaattgcggcttgccaaatcattctcaaaccgttacggattttctt |
176 |
Q |
| |
|
||||||||| |||||||||||||||||||| || || ||||||||||| |
|
|
| T |
47327776 |
ccaaattgccgcttgccaaatcattctcaaccccttccggattttctt |
47327729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 1547719 - 1547630
Alignment:
| Q |
195 |
ccaacattcccaatggacgaataagttgggtggcattacaaaattcgaatccaaccacaccatcaagttaagccaaatatttctagccat |
284 |
Q |
| |
|
||||||||||||||| | | ||| || |||||||||||||||||| |||| ||||||| ||||| || | ||||| ||| |||||||| |
|
|
| T |
1547719 |
ccaacattcccaatgaataattaaattcggtggcattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccat |
1547630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 444
Target Start/End: Complemental strand, 22350217 - 22350144
Alignment:
| Q |
371 |
atctccaaattcaccctatttggaatccggtctagcaaggccttccacacaaaagtgttcaccttggttggaac |
444 |
Q |
| |
|
||||||||||||| ||| ||||||| ||||||| || |||||||||||||||| | ||||||| | |||||| |
|
|
| T |
22350217 |
atctccaaattcaatctagttggaatgcggtctaaaaatgccttccacacaaaagcggtcaccttagatggaac |
22350144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 489
Target Start/End: Original strand, 42774146 - 42774183
Alignment:
| Q |
452 |
ttccaaatttgacggaacaccctcctttccccttccgg |
489 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
42774146 |
ttccaaatatgacgaaacaccctcctttccccttccgg |
42774183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 38548194 - 38548141
Alignment:
| Q |
118 |
ttccaaatgacccaaattgcggcttgccaaatcattctcaaaccgttacggatt |
171 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||| |||||||| || |||||| |
|
|
| T |
38548194 |
ttccacataacccaaattgccgcttgccaaatcatcctcaaacctttccggatt |
38548141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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