View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-6 (Length: 249)
Name: NF1320F-Insertion-6
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 23994763 - 23994592
Alignment:
| Q |
65 |
atatataaacatcaaagcaattcaaaatccaagtcataaaaataattacaaagtagtggcttcttgctcaaagatcagatactcaggtccccacaaaata |
164 |
Q |
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| T |
23994763 |
atatataaacatcaaggtaattcaaggtccaaatcatgaaaataattacaaagaaatggcttcctgatcaaagatcaaatgcacaggtccccacaaaaca |
23994664 |
T |
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| Q |
165 |
acatccaagaaaatggcaaaatgcaaattactatttcctacttcttatgtttagatcctagagaattatttaa |
237 |
Q |
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| T |
23994663 |
a-atataagaaaatggcaaaatgaaaattactatttcctacttcatatgtttagatcctagaaaataatttaa |
23994592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 29917698 - 29917629
Alignment:
| Q |
7 |
agcgatagcggtgttcaaagatcaaagtataagcataaactaatatagttgatacaacatatataaacat |
76 |
Q |
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| T |
29917698 |
agcgatagcggtgttcaaagatcaaagtataagcataaactaatatagttgatacaacatatataaacat |
29917629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 19742880 - 19742783
Alignment:
| Q |
69 |
ataaacatcaaagcaattcaaaatccaagtcataaaaataattacaaagtagtggcttcttgctcaaagatcagatactcaggt-ccccacaaaataa |
165 |
Q |
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||||||||||||| | ||||| ||||||||||||| | ||| |||||||||||||||||||||||||||||||||| | || || ||||||||||||| |
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| T |
19742880 |
ataaacatcaaagtagttcaagatccaagtcataatattaactacaaagtagtggcttcttgctcaaagatcagatgcacaagtcccccacaaaataa |
19742783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 34039974 - 34040021
Alignment:
| Q |
85 |
ttcaaaatccaagtcataaaaataattacaaagtagtggcttcttgct |
132 |
Q |
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||||| |||||| |||||||||||||||||||| ||||||||| |||| |
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| T |
34039974 |
ttcaagatccaaatcataaaaataattacaaagaagtggcttcctgct |
34040021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 42028080 - 42028044
Alignment:
| Q |
91 |
atccaagtcataaaaataattacaaagtagtggcttc |
127 |
Q |
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|||||| |||||||||||||||||||| ||||||||| |
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| T |
42028080 |
atccaaatcataaaaataattacaaagaagtggcttc |
42028044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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