View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-7 (Length: 246)
Name: NF1320F-Insertion-7
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-7 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 44026953 - 44027181
Alignment:
| Q |
21 |
atctaatgtagatggtttagttaacgagggtg---ttccctatcttcagctttgacaatttaatgcgttcttaaacaactctgtcagcattcaacttcac |
117 |
Q |
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| T |
44026953 |
atctaatgtagatggtttagttaatgagggtgcagttccctatcttcagctttgacaatttaatgctttcttaaacaactctgtcagcattcaacttcac |
44027052 |
T |
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| Q |
118 |
ttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttgtatgttactcaac |
217 |
Q |
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| T |
44027053 |
ttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttctatgttactcaac |
44027152 |
T |
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| Q |
218 |
gctcttttatatcactttataacaaccaa |
246 |
Q |
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| T |
44027153 |
gctcttttatatcactttataacaaccaa |
44027181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 43294008 - 43293780
Alignment:
| Q |
21 |
atctaatgtagatggtttagttaacgagggtg---ttccctatcttcagctttgacaatttaatgcgttcttaaacaactctgtcagcattcaacttcac |
117 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
43294008 |
atctaatgtagatggtttagttaatgagggtgcagttccctatcttcagctttgacaatttaatgctttcttaaacaactctgtcagcattcaacttcac |
43293909 |
T |
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| Q |
118 |
ttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttgtatgttactcaac |
217 |
Q |
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| T |
43293908 |
ttaattgaatgatttgcaaatcttaaaataaaaattaaaacctattcacctaagaccaacaaataattaattgtcttgtctcccttctatgttactcaac |
43293809 |
T |
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| Q |
218 |
gctcttttatatcactttataacaaccaa |
246 |
Q |
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| T |
43293808 |
gctcttttatatcactttataacaaccaa |
43293780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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