View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-8 (Length: 384)
Name: NF1320F-Insertion-8
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 7 - 384
Target Start/End: Original strand, 36752640 - 36753017
Alignment:
| Q |
7 |
aatacgggttctaccatcgccaagtggtaaacgaatggtgccctcaacgccaaatataaccgtcgagcctccgtcttccgccattgaaacaccgcatccc |
106 |
Q |
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| T |
36752640 |
aatacgggttcaaccatcgccaagtggtaaaggaatggcgtcctcaacgccaaatataaccgtcgagcctccgtcttccgccatcgaaacaccgcaaccc |
36752739 |
T |
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| Q |
107 |
ataacctcgagcgacgccaacttaatccttgtccctagccactcaagatggttctcatgggattccattcacgaatgcgaaatccgtaacattcccgaat |
206 |
Q |
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| T |
36752740 |
ataacctcgagcgacgccaacttaatccttgtccctagccactcaagatggttctcatgggattccattcacgaatgcgaaatccgtaacattcccgaat |
36752839 |
T |
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| Q |
207 |
cttccaagaaccctagggtttacaaatactacagaaactctatcgtcaagtctttcagattcaatcccaacagaagaatcacattcacagatgttcgcaa |
306 |
Q |
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| T |
36752840 |
cttccaagaaccctagggtttacaaatactacagaaactctatcgtcaagtttttcagattcaatcccaacagaaaaatcacattcacagatgttcgcaa |
36752939 |
T |
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| Q |
307 |
aatcatagtcagtgacgttggttccattcgaagagtctttgattttcttgaagcttggggtttaatcaattatcatcc |
384 |
Q |
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| T |
36752940 |
aatcatagtcggtgacgttggttccattcgaagagtctttgattttcttgaagcttggggtttaatcaattatcatcc |
36753017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 48 - 384
Target Start/End: Original strand, 19123045 - 19123381
Alignment:
| Q |
48 |
cctcaacgccaaatataaccgtcgagcctccgtcttccgccattgaaacaccgc---atcccataacctcgagcgacgccaacttaatccttgtccctag |
144 |
Q |
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| T |
19123045 |
cctcaacgccaaacagaaccgtcgagtctccgtcttccacg---gaaacaccgccgaaacccaaaacctctagcgacggcaacttgatccttgtccctag |
19123141 |
T |
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| Q |
145 |
ccactcaagatggttctcatgggattccattcacgaatgcgaaatccgtaacattcccgaatcttccaagaaccctagggtttacaaatactacagaaac |
244 |
Q |
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| T |
19123142 |
ccactcaagatggttctcatgggattccattcacgaatgtgaaatccgtaacattcccgaatcttctaagaaccctagggtttacaaatactacagaaac |
19123241 |
T |
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| Q |
245 |
tctatcgtcaagtctttcagattcaatcccaacagaagaatcacattcacagatgttcgcaaaatcatagtcagtgacgttggttccattcgaagagtct |
344 |
Q |
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| T |
19123242 |
tctatcgtcaagtttttcagattcaaccctaacagaaaaatcaccttcaccgatgttcgcaaaaccctagtcggtgatgttggttccattcgaagagtct |
19123341 |
T |
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| Q |
345 |
ttgattttcttgaagcttggggtttaatcaattatcatcc |
384 |
Q |
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| T |
19123342 |
ttgattttcttgaagattggggtttaatcaattatcatcc |
19123381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 109 - 384
Target Start/End: Complemental strand, 54293914 - 54293639
Alignment:
| Q |
109 |
aacctcgagcgacgccaacttaatccttgtccctagccactcaagatggttctcatgggattccattcacgaatgcgaaatccgtaacattcccgaatct |
208 |
Q |
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| T |
54293914 |
aacctctagcgacgccaacttaatccttgtccctagccactcaagatggttctcgtgggattccattcacgaatgcgaaatccgcaacattcccgaatct |
54293815 |
T |
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| Q |
209 |
tccaagaaccctagggtttacaaatactacagaaactctatcgtcaagtctttcagattcaatcccaacagaagaatcacattcacagatgttcgcaaaa |
308 |
Q |
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| T |
54293814 |
tccaagaaccctagggtttacaaatactacagaaactctattgtcaagtttttcagattcaatcctaacaggaaaatcaccttcaccgatgttcgcaaaa |
54293715 |
T |
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| Q |
309 |
tcatagtcagtgacgttggttccattcgaagagtctttgattttcttgaagcttggggtttaatcaattatcatcc |
384 |
Q |
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| T |
54293714 |
ccctagtcggtgacgttggttccattcgaagagtgtttgattttcttgaagcttggggtttaatcaattatcatcc |
54293639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 54294074 - 54294012
Alignment:
| Q |
27 |
caagtggtaaacgaatggtgccctcaacgccaaatataaccgtcgagcctccgtcttccgcca |
89 |
Q |
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| T |
54294074 |
caagtggtaaacgaatggcgacctcaaccccaaacagaaccgtcgagcctccgtcttccgcca |
54294012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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