View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320F-Insertion-9 (Length: 761)
Name: NF1320F-Insertion-9
Description: NF1320F
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320F-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 7 - 391
Target Start/End: Complemental strand, 35520682 - 35520298
Alignment:
| Q |
7 |
agaatatttgtttgaaagctgttaaattattcgtagagtcaaagttatgttatatctaaaacatcgtatgatccctaaattattctcttctaataggttt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520682 |
agaatatttgtttgaaagctgttaaattattcgtagagtcaaagttatgttatatctaaaacatcgtatgatccctaaattattctcttctaataggttt |
35520583 |
T |
|
| Q |
107 |
gtcaattggacaggaagaggatttgacatctaattactctttcaatatttgttatggagaccttgtctaaaaatttgtcttttcaacaaaattatttaga |
206 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35520582 |
gtcaattggacagggagaggatttgacatctaattactctttcaatatttgttatggagaccttgtctaaaaatttgtcctttcaacaaaattatttaga |
35520483 |
T |
|
| Q |
207 |
gannnnnnnggtttcaaattattagagaaatttatagtagtaatatgagtgaaaacttcattttatttaaatatattttgtgacataagcacttgtaggt |
306 |
Q |
| |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520482 |
gatttttttggtttcaaattattagagaaatttattgtagtaatatgagtgaaaacttcattttatttaaatatattttgtgacataagcacttgtaggt |
35520383 |
T |
|
| Q |
307 |
gtgtgtacatagaaaaacttctaaaattgctgacattctcaaactaatttttacttattgtataaagctgtcattatataaacgg |
391 |
Q |
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| T |
35520382 |
gtgtgtacatagaaaaacttctaaaattgctgacattctcaaactaatttttacttattgtataaagctgtcattatataaacgg |
35520298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 450 - 761
Target Start/End: Complemental strand, 35520240 - 35519924
Alignment:
| Q |
450 |
cattttcatccacattgaatatgtatcataatcctaggattccgacaggtgaagactatatcaatgttaaaaatacatgtgtacaatagatatagtcacc |
549 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520240 |
cattttcatccacagtgaatatctatcataatcctaggattccgacaggtgaagactatatcaatgttaaaaatacatgtgtacaatagatatagtcacc |
35520141 |
T |
|
| Q |
550 |
acataaaacaatttgattaactgttatcgaataagtggttatgtatnnnnnnnntgtcttgtgnnnnnnnagagagaaaaaatgtcttgttaaccggtgc |
649 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||| |||||||||||| |
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| T |
35520140 |
acataaaacaatttgattaactgttatctaataagtggttatgtataaaaaaaatgtcttgtgtttttttagggagaaaaaatgttttgttaaccggt-a |
35520042 |
T |
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| Q |
650 |
ccccgaggcactagttaatgacctaaagtt--aatnnnnnnnnnntc-agttttgcattaaaaataacattttataattctttaa-aagtgc-agtttcc |
744 |
Q |
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||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||||| |||||| | ||||| |
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| T |
35520041 |
ccccgaggcactagttaatgacctaaaagtaaaaaaaataaaaaatcaagttttgcattaaaaataacattttataattctttaacaagtgcaactttcc |
35519942 |
T |
|
| Q |
745 |
cat-aaaaaattacaatc |
761 |
Q |
| |
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||| |||||||||||||| |
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|
| T |
35519941 |
cataaaaaaattacaatc |
35519924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 637 - 667
Target Start/End: Original strand, 36781845 - 36781875
Alignment:
| Q |
637 |
tgttaaccggtgcccccgaggcactagttaa |
667 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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|
| T |
36781845 |
tgttaaccggtgcccccgaggcactagttaa |
36781875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 636 - 667
Target Start/End: Original strand, 29108693 - 29108724
Alignment:
| Q |
636 |
ttgttaaccggtgcccccgaggcactagttaa |
667 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29108693 |
ttgttaaccggtgcccccgaggcactagttaa |
29108724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 667
Target Start/End: Original strand, 53374908 - 53374942
Alignment:
| Q |
633 |
gtcttgttaaccggtgcccccgaggcactagttaa |
667 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |
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| T |
53374908 |
gtcttgttaaccggtgcccccggggcactagttaa |
53374942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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