View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-1 (Length: 1002)
Name: NF1320R-Insertion-1
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 913; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 913; E-Value: 0
Query Start/End: Original strand, 9 - 1001
Target Start/End: Original strand, 21242067 - 21243066
Alignment:
| Q |
9 |
cattatttcattttattctagttttaaatactcctcgtattcaaaatcatatctatatactattttatcatctctttcaatgcagagatcaggttatggt |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242067 |
cattatttcattttattctagttttaaatactcctcatattcaaaatcatatctatatactattttatcatctctttcaatgcagagatcaggttatggt |
21242166 |
T |
|
| Q |
109 |
ccagatggaatatacaggtccctaagaccttctctagccctcccaaacaatccaaacctttccttagtctcattcctcttcacaagtgtctcctcttccc |
208 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21242167 |
ccagatggaatttacaggtccctaagaccttctctagccctcccaaacaatccaaacctttccttagtctcattcctcttcacaagtgtctcctcttccc |
21242266 |
T |
|
| Q |
209 |
ctaacaaaaccgccctcatcgacgcagactcttcccgaacattctccttctctcaactcaaaacacaagttgcaaaacttgcacacagtttactaaactt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21242267 |
ctaacaaaaccgccctcatcgacgcagactcttcccaaacactctccttctctcaactcaaaacacaagttgcaaaacttgcacacagtttactaaactt |
21242366 |
T |
|
| Q |
309 |
tggcataaacaaaaacgacgtcgtcctcatcctctcccctaataacatcgaattccctgtatgtttcctagctgctgcctccatcggcgcaatagtcacc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21242367 |
tggcataaacaaaaacgacgtcgtcctcatcctctcccccaataacatcgaattccctgtatgtttcctagctgctgcctccatcggcgcaatagtcacc |
21242466 |
T |
|
| Q |
409 |
actgcaaatcctctttacaccgttgcagaactctccaaacaaatcaaggattccaatcctaaactagtcatcactgtccctgaattatggagcaaagtga |
508 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21242467 |
actgcaaatcctctttacaccgttgcggaactctccaaacaaatcaaggattccaatcctaaactagtcatcactgtccctgaattatggagcaaagtga |
21242566 |
T |
|
| Q |
509 |
agagtttcaatttcaactttccagcaattatcatcaattcgggtaatattatatacaaagttagttagattggttagttatagtttgactagttagctgt |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21242567 |
agagtttcaatttcaactttccagcaattatcattaattcgggtaatattatatacaaagttagttagattggttagttatagtttgactagttagctgt |
21242666 |
T |
|
| Q |
609 |
tctcatcattctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcagg |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21242667 |
tctcatcattctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcagg |
21242766 |
T |
|
| Q |
709 |
ggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctc |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21242767 |
ggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctc |
21242866 |
T |
|
| Q |
809 |
acacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatg-ttc |
907 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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|
| T |
21242867 |
acacacaagaacttcatcgcagcgtcgttgatgataaacatggatgatgatttagctggggaattaaacaatgtgttcatctgcgttttaccgatgtttc |
21242966 |
T |
|
| Q |
908 |
atgtg-ttggattggcggttat-acatacgcacagctaaggagagg-agtaccgtggtttcgatggggagg-ttgagttagagg--tttttgaaggtgat |
1001 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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|
| T |
21242967 |
atgtgtttggattggcggttataacatacgcacagctaaggagaggaagtaccgtggtttcgatggggaggtttgagttagagggttttttgaaggtgat |
21243066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 577 - 1001
Target Start/End: Original strand, 21258411 - 21258831
Alignment:
| Q |
577 |
attggttagttatagtttgactagttagctgttctcatcattctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttc |
676 |
Q |
| |
|
||||| |||| |||||| ||||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||||||| |||| | |||| |||||| |
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|
| T |
21258411 |
attggatagtgatagttacactagttagctgtactcatcattcgctatataacaaactttatatctgataggtaatgcaacaggttgaaattcgaacttc |
21258510 |
T |
|
| Q |
677 |
aagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcag |
776 |
Q |
| |
|
| |||||||||||||||||| |||||||| ||||||||||||||| ||||||||| | | ||||||||||| || | |||| |||||||||||| |
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|
| T |
21258511 |
acgagttttgaggcgttgatagaatcagctggggaagtaacagaaataccagaaagcaacgtgaaacagactgaca-------acttctgtactcatcag |
21258603 |
T |
|
| Q |
777 |
gaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaa |
876 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||| | || ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21258604 |
gaactacaggagtgagcaaaggtgtgatactcacccacaagaacttcatcgcgacttcattgatgataaacatggatgatgatttagcaggggaatta-- |
21258701 |
T |
|
| Q |
877 |
caacgtgttcatctgcgttttaccgatg-ttcatgtg-ttggattggcggttat-acatacgcacagctaaggagagg-agtaccgtggtttcgatgggg |
972 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||||||| || ||||||||||||| |||||||| |||||||||||||| ||| | |||||||| | |||| |
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|
| T |
21258702 |
-aatgtgttcctctgcgttttaccgatgtttcatgtgtttagattggcggttataacatacgcgcagctaaggagaggaagtgcggtggtttcaacgggg |
21258800 |
T |
|
| Q |
973 |
ag-gttgagttaga-ggtttttgaaggtgat |
1001 |
Q |
| |
|
|| |||||||||| |||||||||||||||| |
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|
| T |
21258801 |
agatttgagttagagggtttttgaaggtgat |
21258831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 581 - 1001
Target Start/End: Original strand, 21253893 - 21254328
Alignment:
| Q |
581 |
gttagttatagtttgactagttagctgttctcatcattctctacata--acaaactttatatctaataggtaat----gcaacgggttcatattcaaact |
674 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||| || || ||| |||||||||| |||||||||||||| | |||||||||| ||||||||| |
|
|
| T |
21253893 |
gttagttataattaaactagttagctgttcttatcatactttatatataacaaactttacatctaataggtaattaatgtaacgggttcaaattcaaact |
21253992 |
T |
|
| Q |
675 |
tcaagagttttgaggcgttgattgaatcagcaggggaagtaacagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatc |
774 |
Q |
| |
|
||| ||||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||| |
|
|
| T |
21253993 |
tcaccagttttgagtcgttgattgaaacagcatgagaagtaacagaattaccagaaaacgatgtgaaacaaagcgatacagcggctttgttgtactcatc |
21254092 |
T |
|
| Q |
775 |
aggaactacaggagtgagcaaaggtgtgattctcacacacaagaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaatta |
874 |
Q |
| |
|
|||||| |||||||||||||| || ||||| || || ||||||||| |||| || | |||| ||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
21254093 |
aggaacaacaggagtgagcaagggcgtgatacttacccacaagaacgtcattgcggtggcgttaatgattaacatggacgatgatttagcaggggaatta |
21254192 |
T |
|
| Q |
875 |
aacaacgtgttcatctgcgttttaccgatg----ttcatgtg-ttggattggcggttat-acatacgcacagctaaggagagg-agtaccgtggtttcga |
967 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| || |||||| |||||| |||||||| |||||||||||||| ||||| |||||||| | |
|
|
| T |
21254193 |
aacaacgtgttcttctgcgttttaccgatgtttattcatgtgtttagattggtggttataacatacgcgcagctaaggagaggaagtacggtggtttcaa |
21254292 |
T |
|
| Q |
968 |
tggggagg-ttgagttaga-ggtttttgaaggtgat |
1001 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| |
|
|
| T |
21254293 |
cggggaggtttgagttagagggtttttgaaggtgat |
21254328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Complemental strand, 40810194 - 40810140
Alignment:
| Q |
86 |
caatgcagagatcaggttatggtccagatggaatatacaggtccctaagaccttc |
140 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
40810194 |
caatgcagaaatcaggttacggttcagatggaatatacaggtccttaagaccttc |
40810140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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