View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320R-Insertion-10 (Length: 641)

Name: NF1320R-Insertion-10
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320R-Insertion-10
NF1320R-Insertion-10
[»] chr4 (1 HSPs)
chr4 (9-641)||(53248704-53249332)


Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 9 - 641
Target Start/End: Complemental strand, 53249332 - 53248704
Alignment:
Q  9 gttttatactttctatgtaagtaaggataggaataggctggaccgactgaccgacctagactttacaaataccaaacatggcttggactaacacttcaag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53249332 gttttatactttctatgtaagtaaggataggaataggctggaccgac----cgacctagactttacaaacaccaaacatggcttggactaacacttcaag 53249237  T
Q  109 gcataggactgatctgtagtctgtcatagtcagaaacttaaatttaggcttgagtctgcaattattttatgaacatatttaaataagcaatattatctat 208  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53249236 gcataggactgatctgtagtctgtcatagtcataaacttaaatttaggcttgagtctgcaattattttatgaacatatttaaataagcaatattatctat 53249137  T
Q  209 atctaaacaaactaatgcgctaatagacgaacaaggttgacctccattttgatattacaatcacccttgtcggttagcctgacttattctcatccctatc 308  Q
    ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  53249136 atctaaacaaactaatgcgctaatagaagaacaagattgaactccattttgatattacaatcacccttgtcggttagcctgacttattctcatccctacc 53249037  T
Q  309 tgtaagtatagaaaagactcacaagaaaagttacttattttaaccacttttttatgctttctcatccgcctcttcttagcactggtaagttttactaggc 408  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53249036 tgtaagtatagaaaagactaacaagaaaagttacttattttaaccacttttttatgctttctcatccgcctcttcttagcactggtaagttttaccaggc 53248937  T
Q  409 taaattgatttaaaattaaatgttaaatgctgaannnnnnnccataaaagagaaaggaaagaaatatatgatatactgatatagtcgac-ttcnnnnnnn 507  Q
    | ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| |||           
T  53248936 t-aattgatttaaaattaaatgttaaatgctgaatttttttccataaaagagaaaggaaagaaatatatgatatactgatatagtcgactttctttttcg 53248838  T
Q  508 nnnnnnnatctttctgttaatgtacacactactgattattttgcattgaggtggcctgtaaaattgtagttgccccctccnnnnnnnnngctcaaccaag 607  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||         |||||||||||    
T  53248837 tttttttatctttctgttaatgtacacactactgattattttgcattgaggtggcctgtaaaattgtagttgcctcctcctttttttttgctcaaccaag 53248738  T
Q  608 tgagctacccatcccccctcccaaaattgttgct 641  Q
    ||||||||||||||||||||||||||| ||||||    
T  53248737 tgagctacccatcccccctcccaaaatagttgct 53248704  T

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