View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-11 (Length: 640)
Name: NF1320R-Insertion-11
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-11 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 473 - 640
Target Start/End: Original strand, 31991909 - 31992076
Alignment:
| Q |
473 |
ctcaccagttctatggtgaacaatgcgttctgtgtcttgcagagttgcatgttaagggctatatcgacttccaatatcagttcttttgtcgcagtattca |
572 |
Q |
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| T |
31991909 |
ctcaccagttctatggtgaacaatgcgttctttgtcttgcagagttgcatgttaagggctatatcgacttccaatatcagttcttttgtcgcagtattca |
31992008 |
T |
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| Q |
573 |
gtggtgctggtagttttacgcgtacaacagaaaattaaagacaatattggagtgtcccatgattatat |
640 |
Q |
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| T |
31992009 |
gtggtgctggtagttttacgcttacaacagaaaattaaagacaatatttgagtgtcccatgattatat |
31992076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 281 - 479
Target Start/End: Complemental strand, 31985803 - 31985609
Alignment:
| Q |
281 |
acataatacataaccctacattatcttctcctcccctccaaaatatattttggtgaaatatttttggattcaacgatcgaaaccatacaacgaaaatcct |
380 |
Q |
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| T |
31985803 |
acataatacataacgctacattatcttttcctcctttccaaaatatattttggtggattttttttggattcaacgatggaaaccattcaatgaaaatgtc |
31985704 |
T |
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| Q |
381 |
aaaaacttcttgcaaaatcaatacgcatatataattctctgcagtcacaagttttcaagttctcaaacgaagcagcaacaccaaggaatggcctcacca |
479 |
Q |
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| T |
31985703 |
aaaaacttcttgcaaaatcaatacg---acgtaattctctgaagtcacaagttttcaagttctcaaac-aagcagcaacaccaagcaatggccacacca |
31985609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 31985991 - 31985930
Alignment:
| Q |
33 |
ataaataaataattgtatttatatatcataatatttttacatcacaatgtttgtacatttat |
94 |
Q |
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| T |
31985991 |
ataaatatataattgtatttatatgtcataatatttttacatcacattggtagtacatttat |
31985930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 580
Target Start/End: Original strand, 31992695 - 31992736
Alignment:
| Q |
539 |
acttccaatatcagttcttttgtcgcagtattcagtggtgct |
580 |
Q |
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| T |
31992695 |
acttccaatattagttcttttgtcgcggtattgagtggtgct |
31992736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 588
Target Start/End: Complemental strand, 49067628 - 49067511
Alignment:
| Q |
471 |
gcctcaccagttctatggtgaacaatgcgttctgtgtcttgcagagttgcatgttaagggctatatcgacttccaatatcagttcttttgtcgcagtatt |
570 |
Q |
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| T |
49067628 |
gcctcaccacttctatggtggatgatgtattctatgtcttgcaaagttgcttgcgaagggctatatccacttccaatatcagttctgttgtcgcggtatt |
49067529 |
T |
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| Q |
571 |
cagtggtgctggtagttt |
588 |
Q |
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| T |
49067528 |
gagcggtgctagtagttt |
49067511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 245
Target Start/End: Complemental strand, 35750295 - 35750266
Alignment:
| Q |
216 |
caatgcattgtccttaccaactgagttatg |
245 |
Q |
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| T |
35750295 |
caatgcattgtccttaccaactgagttatg |
35750266 |
T |
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