View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-13 (Length: 546)
Name: NF1320R-Insertion-13
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-13 |
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Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 9 - 544
Target Start/End: Original strand, 26561756 - 26562293
Alignment:
| Q |
9 |
aatttttatggacctaaatgtatcttttataaaaaagaagatgacggtgtattatattgttattatttacaaaatgaatagtggacaaataggtgaga-- |
106 |
Q |
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| T |
26561756 |
aatttttatggacctaaatgtatcttttataaaaaagaaaatgacggtgtattatattgttattatttacaaaatgaatagtggacaaattggtgagaga |
26561855 |
T |
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| Q |
107 |
gagagatgcataccacaacataacagcagaagcaatagtgatcttgaaataaggccatatccctgtgaaagctctcctagagaaacctgtccaactttcc |
206 |
Q |
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| T |
26561856 |
gagagatgcataccacaacataacagcagaagcaatagtgatcttgaaataaggccatatccctatgaaagctctcctagagaaacctgtccaactttcc |
26561955 |
T |
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| Q |
207 |
ttacaagatggacttagaagaatataaagtccattcattaatgcaaaaacccaccaagaaaagctgagtgtcaaagcagcttcaaaaactccatagccca |
306 |
Q |
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| T |
26561956 |
ttacaagatggacttagaagaatataaaatccattcattaatgcaaaaacccaccaagaaaaactgagagtcaaagcagcttcaaaaactccatagccca |
26562055 |
T |
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| Q |
307 |
aaacataaatcacaacccaattgagtaatatgtgcaagcaaaacactccaaacaccatgtatgcaagagggttaactatgttttgagcttggaggaatct |
406 |
Q |
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| T |
26562056 |
aaacataaatcacaacccaattgagtaatatgtgcaagcaaaacactccaaacaccatgtatgcaagagggttaactatgttttgagcttggaggaatct |
26562155 |
T |
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| Q |
407 |
ttgcatagggtaactcaatgcaagtgcatatagttgaggaattaatccatgagcaaatatttgaccttcttgtgctatttcttcagcctgacccatagct |
506 |
Q |
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| T |
26562156 |
ttgcatagggtaactcaatgcaagtgcatatagttgaggaattaatccatgagcaaatatttgaccttcttgtgctatttcttcagcctgacccatagct |
26562255 |
T |
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| Q |
507 |
ttgagaattggaccacaataccaatagagaaatgaaag |
544 |
Q |
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| T |
26562256 |
ttgagaattggaccacaataccaatagagaaatgaaag |
26562293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 26564172 - 26564207
Alignment:
| Q |
71 |
ttatttacaaaatgaatagtggacaaataggtgaga |
106 |
Q |
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| T |
26564172 |
ttatttacaaaatgaatagtgtacaaataggtgaga |
26564207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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