View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1320R-Insertion-14 (Length: 500)
Name: NF1320R-Insertion-14
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1320R-Insertion-14 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 8578147 - 8577862
Alignment:
| Q |
7 |
caatattgacaataaatttactaaacatatagttggataaacttatagcaaaaattgtagagagcaccaccaaaagaaatatactggatcgggaaaaata |
106 |
Q |
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| T |
8578147 |
caatattgacaataaatttactaaatatatagttggataaacttatagcaaaaattgtagagaacaccaccaaaagaaatatactggatcgggaaaaata |
8578048 |
T |
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| Q |
107 |
tttttgacaggttaaaagattctcattataacagataatttaaataattaatagagttggttagtaataatcattgttttaagagattataacgtttagg |
206 |
Q |
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| T |
8578047 |
tttttgacaggttaaaagattctcattataacagataatttaaataattaatagagttggttagtaataatcattgttttaagagattataacgtttagt |
8577948 |
T |
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| Q |
207 |
aactttgagcaaatggtttaacaaaaagaaagcggctaatctagttgatagtaaattattaggacaaatatgaagtaatttgtaaa |
292 |
Q |
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| T |
8577947 |
aactttgagcaaatggtttaacaaaaagaaagcggctaaactagctgatagtaaattcttaggacaaatatgaagtaatttgtaaa |
8577862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 316 - 498
Target Start/End: Complemental strand, 8577867 - 8577689
Alignment:
| Q |
316 |
tgtaaataatattttgaccctcaaaattgtaaagattgagcaatttggtcctttaaatttataaaatacaaattagtctattaaataaattaaagaaaat |
415 |
Q |
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| T |
8577867 |
tgtaaataatattttgaccctcaaaattgtaaagattgagcaatttagtcctttaaatttataaaatacaaattagtctattaaat----taaagaaaat |
8577772 |
T |
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| Q |
416 |
caatcaattgagtcacacagtcaaaatatctttttaataattatccatcaaaatcaatggaaacatatatattgatttgattt |
498 |
Q |
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| T |
8577771 |
caatgaattgagtcacacaatcaaaatatctttttaataattatccatcaaaattaatggaaacatatatattgatttgattt |
8577689 |
T |
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