View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1320R-Insertion-15 (Length: 487)

Name: NF1320R-Insertion-15
Description: NF1320R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1320R-Insertion-15
NF1320R-Insertion-15
[»] chr4 (8 HSPs)
chr4 (59-363)||(22423925-22424232)
chr4 (301-348)||(24449368-24449415)
chr4 (304-349)||(35653733-35653778)
chr4 (301-349)||(53011981-53012029)
chr4 (8-39)||(22424251-22424282)
chr4 (307-349)||(26328788-26328830)
chr4 (299-349)||(51066059-51066109)
chr4 (306-362)||(21791305-21791361)
[»] chr2 (10 HSPs)
chr2 (302-363)||(39081647-39081708)
chr2 (301-349)||(13997579-13997627)
chr2 (307-360)||(1419164-1419217)
chr2 (437-483)||(38599521-38599566)
chr2 (300-349)||(29480385-29480434)
chr2 (301-349)||(1226017-1226065)
chr2 (304-363)||(36059658-36059717)
chr2 (442-483)||(38599635-38599675)
chr2 (300-363)||(15457753-15457817)
chr2 (301-349)||(17117395-17117443)
[»] chr3 (9 HSPs)
chr3 (304-363)||(46904994-46905053)
chr3 (301-363)||(27303439-27303501)
chr3 (307-363)||(42009039-42009095)
chr3 (300-348)||(51147205-51147253)
chr3 (302-349)||(7767332-7767379)
chr3 (302-363)||(25598833-25598895)
chr3 (302-363)||(21784531-21784592)
chr3 (301-349)||(28132484-28132532)
chr3 (301-349)||(48626779-48626827)
[»] chr5 (12 HSPs)
chr5 (303-349)||(16515771-16515817)
chr5 (302-348)||(7390152-7390198)
chr5 (301-361)||(17326099-17326159)
chr5 (309-363)||(138395-138449)
chr5 (302-348)||(931636-931682)
chr5 (307-363)||(33281925-33281981)
chr5 (308-363)||(18873712-18873766)
chr5 (306-363)||(8379199-8379255)
chr5 (304-349)||(41612989-41613034)
chr5 (302-350)||(13424130-13424178)
chr5 (315-363)||(13656463-13656511)
chr5 (301-349)||(37047049-37047097)
[»] chr1 (8 HSPs)
chr1 (301-363)||(42740357-42740419)
chr1 (301-363)||(37873506-37873568)
chr1 (300-361)||(17674103-17674164)
chr1 (301-349)||(26486125-26486173)
chr1 (301-350)||(18127688-18127737)
chr1 (308-349)||(22386593-22386634)
chr1 (302-349)||(276-323)
chr1 (301-349)||(51109848-51109896)
[»] chr8 (6 HSPs)
chr8 (301-348)||(35875168-35875215)
chr8 (305-349)||(33453021-33453065)
chr8 (301-361)||(36514905-36514964)
chr8 (300-348)||(30915035-30915083)
chr8 (301-349)||(42076374-42076422)
chr8 (315-363)||(18112376-18112424)
[»] chr7 (9 HSPs)
chr7 (303-363)||(36438104-36438164)
chr7 (300-348)||(7370058-7370106)
chr7 (313-363)||(40737760-40737810)
chr7 (438-484)||(40737900-40737945)
chr7 (300-350)||(44875908-44875958)
chr7 (311-348)||(4100228-4100265)
chr7 (301-349)||(29730839-29730887)
chr7 (301-349)||(29742060-29742108)
chr7 (301-349)||(33910331-33910379)
[»] chr6 (4 HSPs)
chr6 (304-363)||(30915115-30915174)
chr6 (313-363)||(3748329-3748379)
chr6 (311-348)||(22504011-22504048)
chr6 (301-349)||(2618619-2618667)


Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 59 - 363
Target Start/End: Complemental strand, 22424232 - 22423925
Alignment:
Q  59 acatcatccaaggaacctatatatcagtgcaaataattttgaaatttatcactttatagagtatcgtggatcttgctaaagtatagtttcttggtttctc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22424232 acatcatccaaggaacctatatatcagtgcaaataattttgaaatttatcactttatagagtatcgtggatcttgctaaagtatagtttcttggtttctc 22424133  T
Q  159 ccatatacaatagtgaagtctctttaaggttaaggtttatccctatcataaacatcctcacatcatggctcatagcccattaccaatcactaatcattat 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22424132 ccatatacaatagtgaagtctctttaaggttaaggtttatccctatcataaacatcctcacctcatggctcatagcccattaccaatcattaatcattat 22424033  T
Q  259 cttgttttataaaattttaagatgacggaa---tggtgtctcggtcagggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcag 355  Q
    ||||||||||||||||||||||||| ||||   |||||||||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  22424032 cttgttttataaaattttaagatgagggaatggtggtgtctcggtcatggctgttcctatgaaataggagtctcggttctatttttaaaataggtctcag 22423933  T
Q  356 taaaataa 363  Q
    ||||||||    
T  22423932 taaaataa 22423925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 24449415 - 24449368
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatag 348  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  24449415 cagggccgttactatgaaataggaggttcggttctatttttaaaatag 24449368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 35653733 - 35653778
Alignment:
Q  304 ggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||||    
T  35653733 ggccgttcctatgaaatagaaggctcggttctatttttaagatagg 35653778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 53012029 - 53011981
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||||||| |||||||||||| |||| ||| |||||||||||||    
T  53012029 cagggccgttcctgtgaaataggaggctcggctctctttttaaaatagg 53011981  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 22424282 - 22424251
Alignment:
Q  8 aggagatggttaagtagcttagtattgataaa 39  Q
    ||||||||||||||||||||||||||||||||    
T  22424282 aggagatggttaagtagcttagtattgataaa 22424251  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 349
Target Start/End: Original strand, 26328788 - 26328830
Alignment:
Q  307 cgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||||||||||||||||||  ||| |||||||||||||    
T  26328788 cgttcctatgaaataggaggttcgactctctttttaaaatagg 26328830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 51066059 - 51066109
Alignment:
Q  299 gtcagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||| ||| |||||||||||||||| |||||||| | |||||||||||    
T  51066059 gtcagggacgtccctatgaaataggaggctcggttctctatttaaaatagg 51066109  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 362
Target Start/End: Original strand, 21791305 - 21791361
Alignment:
Q  306 ccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaata 362  Q
    |||||||||||||||| |||| |||  ||| ||||||||||||| | ||||||||||    
T  21791305 ccgttcctatgaaatatgaggctcgactctctttttaaaataggctccagtaaaata 21791361  T

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Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 302 - 363
Target Start/End: Complemental strand, 39081708 - 39081647
Alignment:
Q  302 agggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  39081708 agggccgttcctatgaaataggaggttcggttctatttttaaaataggtcccagtaaaataa 39081647  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 13997627 - 13997579
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  13997627 caggaccgttcctatgaaataggaggctcggttctatttttaaaatagg 13997579  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 1419217 - 1419164
Alignment:
Q  307 cgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaa 360  Q
    |||||| || |||||||||||||||||||||||||||||||||||  |||||||    
T  1419217 cgttccaataaaataggaggttcggttctatttttaaaataggttcgagtaaaa 1419164  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 437 - 483
Target Start/End: Complemental strand, 38599566 - 38599521
Alignment:
Q  437 taagtgaaagagagatgaaatttaccgaacggtgtcagtttgaaatg 483  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||    
T  38599566 taagtgaaagagagatgaaatttacctaacggtgtc-gtttgaaatg 38599521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 349
Target Start/End: Original strand, 29480385 - 29480434
Alignment:
Q  300 tcagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||| |||||||||||||||| |||| | ||||||||||||||||||||    
T  29480385 tcaggcccgttcctatgaaatatgaggcttggttctatttttaaaatagg 29480434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 1226017 - 1226065
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    |||||||||||||||||||||||||| |||  ||| |||||||||||||    
T  1226017 cagggccgttcctatgaaataggaggctcgactctctttttaaaatagg 1226065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 36059658 - 36059717
Alignment:
Q  304 ggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    ||||||| ||||||||||||||| |||  ||| ||||||||||||||  |||||||||||    
T  36059658 ggccgttgctatgaaataggaggctcgactctttttttaaaataggtaccagtaaaataa 36059717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 483
Target Start/End: Complemental strand, 38599675 - 38599635
Alignment:
Q  442 gaaagagagatgaaatttaccgaacggtgtcagtttgaaatg 483  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  38599675 gaaagagagatgaaatttacctaacggtgtc-gtttgaaatg 38599635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 15457817 - 15457753
Alignment:
Q  300 tcagggccgttcctatgaaataggaggttcggttctatttttaaaataggt-ttcagtaaaataa 363  Q
    |||| ||||| |||||||||||||||| |||| ||| | |||||||||||| |||| ||||||||    
T  15457817 tcagagccgtccctatgaaataggaggctcggctctctatttaaaataggtcttcaataaaataa 15457753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 17117395 - 17117443
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||| |||||||||||||||| |||| ||| | |||||||||||    
T  17117395 cagggccgtccctatgaaataggaggctcggctctctatttaaaatagg 17117443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 46905053 - 46904994
Alignment:
Q  304 ggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  46905053 ggccgttcctatgaaataggaggctcggttctatttttaaaataggttccagtaaaataa 46904994  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 27303501 - 27303439
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||  ||||||||||    
T  27303501 cagggccgttccaatgaaataggaggctcggttctatttttaaaataggttctagtaaaataa 27303439  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 42009039 - 42009095
Alignment:
Q  307 cgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    ||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||    
T  42009039 cgttcctatgaaatatgaggttcggttctatttttaaaataagcttcagtaaaataa 42009095  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 51147253 - 51147205
Alignment:
Q  300 tcagggccgttcctatgaaataggaggttcggttctatttttaaaatag 348  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51147253 tcagggccgttcctatgaaataggaggctcggttctatttttaaaatag 51147205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 7767379 - 7767332
Alignment:
Q  302 agggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7767379 agggccgttcctatgaaataggaggctcggttctatttttaaaatagg 7767332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 25598833 - 25598895
Alignment:
Q  302 agggccgttcctatgaaataggaggttcggttctatttttaaaataggt-ttcagtaaaataa 363  Q
    |||||||||||||| |||||||||| |||| ||| |||||||||||||| || ||||||||||    
T  25598833 agggccgttcctataaaataggaggctcggctctctttttaaaataggtctttagtaaaataa 25598895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 21784531 - 21784592
Alignment:
Q  302 agggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||||| ||| ||||||||||||||||  ||| ||||||||||||||   ||||||||||    
T  21784531 agggccgtccctctgaaataggaggttcgactctctttttaaaataggtcatagtaaaataa 21784592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 28132484 - 28132532
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||| ||| |||||||||||| |||| ||| |||||||||||||    
T  28132484 cagggccgtccctgtgaaataggaggctcggctctctttttaaaatagg 28132532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 48626779 - 48626827
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    |||| |||| |||||||||||||||| |||||||| | |||||||||||    
T  48626779 caggaccgtccctatgaaataggaggctcggttctctatttaaaatagg 48626827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 16515817 - 16515771
Alignment:
Q  303 gggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16515817 gggccgttcctatgaaataggaggttcggttctatttttaaaatagg 16515771  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 7390152 - 7390198
Alignment:
Q  302 agggccgttcctatgaaataggaggttcggttctatttttaaaatag 348  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||    
T  7390152 agggccgttcctatgaaatagaaggctcggttctatttttaaaatag 7390198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 361
Target Start/End: Complemental strand, 17326159 - 17326099
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaat 361  Q
    |||||| ||| |||||||||| |||| |||||||||||||||||||||| | |||||||||    
T  17326159 cagggcagtttctatgaaatatgaggctcggttctatttttaaaataggctccagtaaaat 17326099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 138449 - 138395
Alignment:
Q  309 ttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    ||||||||||||| |||| | ||||||||||||| |||||| |||||||||||||    
T  138449 ttcctatgaaataagaggcttggttctatttttagaataggcttcagtaaaataa 138395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 348
Target Start/End: Complemental strand, 931682 - 931636
Alignment:
Q  302 agggccgttcctatgaaataggaggttcggttctatttttaaaatag 348  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||    
T  931682 agggtcgttcctatgaaataggaggttcggctctctttttaaaatag 931636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 33281981 - 33281925
Alignment:
Q  307 cgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    ||||||||||||||| |||||| |  ||| |||||||||||||| ||||||||||||    
T  33281981 cgttcctatgaaatatgaggtttgactctctttttaaaataggtctcagtaaaataa 33281925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 18873766 - 18873712
Alignment:
Q  308 gttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||||| |||||||||| ||||||||| ||||||||||||| ||| ||||||||    
T  18873766 gttcctataaaataggaggctcggttcta-ttttaaaataggtctcactaaaataa 18873712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 8379199 - 8379255
Alignment:
Q  306 ccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||| ||||||||||||| ||||| ||| |||||||||||||| | ||||||||||    
T  8379199 ccgttcttatgaaataggagattcggctctctttttaaaataggtct-agtaaaataa 8379255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 41613034 - 41612989
Alignment:
Q  304 ggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||||||||||||||||| || | ||| |||||||||||||    
T  41613034 ggccgttcctatgaaataggaggctctgctctctttttaaaatagg 41612989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 13424178 - 13424130
Alignment:
Q  302 agggccgttcctatgaaataggaggttcggttctatttttaaaataggt 350  Q
    |||||||| ||| |||||||||||| |||| ||| ||||||||||||||    
T  13424178 agggccgtccctgtgaaataggaggctcggctctctttttaaaataggt 13424130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 13656511 - 13656463
Alignment:
Q  315 tgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    ||||||||||||||||| ||| ||||||||||||||   ||||||||||    
T  13656511 tgaaataggaggttcggctctctttttaaaataggtcatagtaaaataa 13656463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 37047097 - 37047049
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||| ||  ||||||||||||||||| ||| |||||||||||||    
T  37047097 cagggccgtccccgtgaaataggaggttcggctctctttttaaaatagg 37047049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 363
Target Start/End: Complemental strand, 42740419 - 42740357
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||    
T  42740419 cagggccgttcctatgaaataggaggctcggttctatttttaaaataggccccagtaaaataa 42740357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 37873506 - 37873568
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||||||   |||||||||||    
T  37873506 cagggccgtttctatgaaataggaggctcgattctatttttaaaataggccccagtaaaataa 37873568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 17674103 - 17674164
Alignment:
Q  300 tcagggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaat 361  Q
    |||||| ||||||||||||||| ||||||||  ||||||||||||||||| | |||||||||    
T  17674103 tcagggtcgttcctatgaaataagaggttcgactctatttttaaaataggctccagtaaaat 17674164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 26486125 - 26486173
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  26486125 cagggccgttcctataaaataggaggctcggttctattttcaaaatagg 26486173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 350
Target Start/End: Original strand, 18127688 - 18127737
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaataggt 350  Q
    ||||||||| ||| ||||||||||||||||||||| |||| |||||||||    
T  18127688 cagggccgtccctgtgaaataggaggttcggttctcttttcaaaataggt 18127737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 22386593 - 22386634
Alignment:
Q  308 gttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||||||||||||| |||||| |||||||||||||||    
T  22386593 gttcctatgaaataggaggctcggttttatttttaaaatagg 22386634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 323 - 276
Alignment:
Q  302 agggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||| |||||| |||||||||||| |||||||| |||||||||||||    
T  323 agggctgttcctgtgaaataggaggctcggttctctttttaaaatagg 276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 51109848 - 51109896
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||| ||| |||||||||||| |||| ||| |||||||||||||    
T  51109848 cagggccgtccctgtgaaataggaggctcggctctctttttaaaatagg 51109896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 35875215 - 35875168
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatag 348  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  35875215 cagggccgttactatgaaataggaggttcggttctatttttaaaatag 35875168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 33453065 - 33453021
Alignment:
Q  305 gccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||    
T  33453065 gccgttcctatgaaataggaggttcagttctctttttaaaatagg 33453021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 301 - 361
Target Start/End: Original strand, 36514905 - 36514964
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaat 361  Q
    |||||||||||||||||||||||||||| |||| |||||||||| |||  |||||||||||    
T  36514905 cagggccgttcctatgaaataggaggtttggtt-tatttttaaattagacttcagtaaaat 36514964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 30915035 - 30915083
Alignment:
Q  300 tcagggccgttcctatgaaataggaggttcggttctatttttaaaatag 348  Q
    |||||||||||| ||| ||||||||||||||| ||| ||||||||||||    
T  30915035 tcagggccgttcttataaaataggaggttcggctctctttttaaaatag 30915083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 42076422 - 42076374
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||||| | ||||||| |||||||||||||||| ||||||||||    
T  42076422 cagggccgttcatgtgaaataagaggttcggttctattgttaaaatagg 42076374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 18112424 - 18112376
Alignment:
Q  315 tgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    ||||||||||||||||| ||| ||||||||||||||   ||||||||||    
T  18112424 tgaaataggaggttcggctctctttttaaaataggtcctagtaaaataa 18112376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 36438104 - 36438164
Alignment:
Q  303 gggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||||||  ||||||||||||    
T  36438104 gggccgtacctacgaaataggaggctcggttctatttttaaaataggcctcagtaaaataa 36438164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 7370106 - 7370058
Alignment:
Q  300 tcagggccgttcctatgaaataggaggttcggttctatttttaaaatag 348  Q
    |||||| | |||||||||||||||||| |||||||||||||||||||||    
T  7370106 tcagggtcattcctatgaaataggaggctcggttctatttttaaaatag 7370058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 40737760 - 40737810
Alignment:
Q  313 tatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||||||||||| ||||||||||||||||||||| ||  ||||||||||    
T  40737760 tatgaaataggaggctcggttctatttttaaaatagattcgagtaaaataa 40737810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 40737900 - 40737945
Alignment:
Q  438 aagtgaaagagagatgaaatttaccgaacggtgtcagtttgaaatgt 484  Q
    ||||||||||||| ||||||||||| |||||||||| ||||||||||    
T  40737900 aagtgaaagagaggtgaaatttacctaacggtgtca-tttgaaatgt 40737945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 350
Target Start/End: Original strand, 44875908 - 44875958
Alignment:
Q  300 tcagggccgttcctatgaaataggaggttcggttctatttttaaaataggt 350  Q
    |||||||||| |||||||||||||||| |||  ||| ||||||||||||||    
T  44875908 tcagggccgtccctatgaaataggaggctcgactctctttttaaaataggt 44875958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 4100265 - 4100228
Alignment:
Q  311 cctatgaaataggaggttcggttctatttttaaaatag 348  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  4100265 cctatgaaataggaggttcggctctctttttaaaatag 4100228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Original strand, 29730839 - 29730887
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||| |||||||||||||||||||| |||  ||| |||||||||||||    
T  29730839 cagggtcgttcctatgaaataggaggctcgactctctttttaaaatagg 29730887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 29742108 - 29742060
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||| |||||||||||||||||||| |||  ||| |||||||||||||    
T  29742108 cagggtcgttcctatgaaataggaggctcgactctctttttaaaatagg 29742060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 33910379 - 33910331
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||| ||| |||||||||||| |||| ||| |||||||||||||    
T  33910379 cagggccgtccctgtgaaataggaggctcggctctctttttaaaatagg 33910331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 304 - 363
Target Start/End: Original strand, 30915115 - 30915174
Alignment:
Q  304 ggccgttcctatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||||||||||||||| |||| ||   ||| |||||||||||||||||||||||||||    
T  30915115 ggccgttcctatgaaataagaggctcaactctctttttaaaataggtttcagtaaaataa 30915174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 363
Target Start/End: Original strand, 3748329 - 3748379
Alignment:
Q  313 tatgaaataggaggttcggttctatttttaaaataggtttcagtaaaataa 363  Q
    |||||||||||||| |||||||||||||||||||||||   ||||||||||    
T  3748329 tatgaaataggaggctcggttctatttttaaaataggtccgagtaaaataa 3748379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 22504048 - 22504011
Alignment:
Q  311 cctatgaaataggaggttcggttctatttttaaaatag 348  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  22504048 cctatgaaataggaggctcggttctctttttaaaatag 22504011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 349
Target Start/End: Complemental strand, 2618667 - 2618619
Alignment:
Q  301 cagggccgttcctatgaaataggaggttcggttctatttttaaaatagg 349  Q
    ||||||||| | | ||||||||||||||||| ||| |||||||||||||    
T  2618667 cagggccgtccatgtgaaataggaggttcggctctctttttaaaatagg 2618619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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